fix referenced morphs/biophysics: load from included files, add tests, add some error checking #432
Workflow file for this run
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| name: Build | |
| on: | |
| push: | |
| branches: [ master, development, experimental ] | |
| pull_request: | |
| branches: [ master, development, experimental ] | |
| jobs: | |
| build: | |
| name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| runs-on: [ubuntu-latest, windows-latest, macos-latest] | |
| exclude: | |
| - runs-on: macos-latest | |
| python-version: "3.8" | |
| - runs-on: macos-latest | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| #sudo apt-get install libhdf5-serial-dev liblzo2-dev libgraphviz-dev -y | |
| python -m pip install --upgrade pip | |
| - name: Install HDF5 for pytables on macos-latest | |
| if: ${{ matrix.runs-on == 'macos-latest' }} | |
| run: | | |
| brew install hdf5 | |
| - name: Build package | |
| run: | | |
| pip install .[full] | |
| - name: Test with pytest | |
| if: ${{ matrix.runs-on == 'ubuntu-latest' }} | |
| run: | | |
| # Just test on linux for now... | |
| pytest -vs | |
| - name: Run examples | |
| run: | | |
| cd neuroml/examples | |
| python run_all.py | |
| - name: Final version info | |
| run: | | |
| pip list | |
| - name: Lint with flake8 | |
| if: ${{ matrix.runs-on == 'ubuntu-latest' }} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics |