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Fix custom residues in config #229

Merged
merged 2 commits into from
Aug 16, 2023
Merged

Fix custom residues in config #229

merged 2 commits into from
Aug 16, 2023

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bittremieux
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Custom residues in the config file were ignored, making it impossible to retrain Casanovo with now PTMs for example.

Fixes #228, fixes #227.

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codecov bot commented Aug 7, 2023

Codecov Report

Merging #229 (f88a324) into dev (3ac0887) will increase coverage by 0.22%.
The diff coverage is n/a.

@@            Coverage Diff             @@
##              dev     #229      +/-   ##
==========================================
+ Coverage   88.91%   89.13%   +0.22%     
==========================================
  Files          12       12              
  Lines         902      902              
==========================================
+ Hits          802      804       +2     
+ Misses        100       98       -2     
Files Changed Coverage Δ
casanovo/config.py 92.68% <ø> (+4.87%) ⬆️

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@wfondrie wfondrie left a comment

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LGTM. Sorry for the delay!

@bittremieux bittremieux merged commit 514db80 into dev Aug 16, 2023
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@bittremieux bittremieux deleted the residues branch August 16, 2023 09:10
bittremieux added a commit that referenced this pull request Aug 16, 2023
* Fix specifying custom residues

* Update changelog
bittremieux added a commit that referenced this pull request Aug 16, 2023
* Fix specifying custom residues

* Update changelog
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User's custom residue vocab not loaded Changing Modifications in configuration file
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