Casanovo v3.3.0

3.3.0 - 2023-04-04

Added

• Included the min_peptide_len parameter in the configuration file to restrict predictions to peptide with a minimum length.
• Export multiple PSMs per spectrum using the top_match parameter in the configuration file.

Changed

• Calculate the amino acid scores as the average of the amino acid scores and the peptide score.
• Spectra from mzML and mzXML peak files are referred to by their scan numbers in the mzTab output instead of their indexes.

Fixed

• Verify that the final predicted amino acid is the stop token.
• Spectra are correctly matched to their input peak file when analyzing multiple files simultaneously.
• The score of the stop token is taken into account when calculating the predicted peptide score.
• Peptides with incorrect N-terminal modifications (multiple or internal positions) are no longer predicted.