maj data scorff 2018 (becards)

CIEM/T3.3.6.1.csv

@@ -10,27 +10,27 @@
 "1992",3.39,17.11,8.01,NA
 "1993",2.87,19.47,4.84,NA
 "1994",5.58,25.09,1.31,NA
-"1995",3.19,34.28,2.1,9.83
-"1996",2.7,5.51,2.71,21.7
-"1997",4.44,38.49,2.34,5.75
-"1998",2.43,21.43,2.37,4.91
-"1999",10.71,93.1,2.28,11.17
-"2000",6.92,9.81,4.13,9.63
-"2001",NA,23,0.4,4.98
-"2002",2.25,10.79,0.68,22.26
-"2003",4.46,28.33,1.69,11.05
-"2004",5.02,14.32,1.44,6.27
+"1995",3.19,34.28,2.1,10.2
+"1996",2.7,5.51,2.71,21.8
+"1997",4.44,38.49,2.34,5.66
+"1998",2.43,21.43,2.37,4.8
+"1999",10.71,93.1,2.28,11.63
+"2000",6.92,9.81,4.13,9.35
+"2001",NA,23,0.4,4.84
+"2002",2.25,10.79,0.68,22.5
+"2003",4.46,28.33,1.69,11.06
+"2004",5.02,14.32,1.44,6.3
 "2005",2.49,24.17,0.98,8.32
-"2006",3.09,15.03,3.28,7.04
-"2007",3.45,12.58,2.42,4.95
-"2008",1.99,7.54,3.74,3.01
-"2009",15.03,16.16,2.09,6.51
-"2010",6.05,18.08,1.61,4.45
+"2006",3.09,15.03,3.28,7.03
+"2007",3.45,12.58,2.42,4.93
+"2008",1.99,7.54,3.74,3
+"2009",15.03,16.16,2.09,6.49
+"2010",6.05,18.08,1.61,4.43
 "2011",3.25,14.81,2.84,4.97
-"2012",3.1,23.16,0.72,8.51
-"2013",9.66,21.11,1.63,8.99
-"2014",5.58,9.58,1.12,5.8
-"2015",3.17,13.77,1.32,9.42
-"2016",6.61,12.66,NA,9.08
+"2012",3.1,23.16,0.72,8.53
+"2013",9.66,21.11,1.63,9.06
+"2014",5.58,9.58,1.12,5.77
+"2015",3.17,13.77,1.32,9.32
+"2016",6.61,12.66,NA,9.17
 "2017",NA,NA,NA,NA
 "2018",NA,NA,NA,NA

CIEM/Table7_Scorff_2018.csv

@@ -1,26 +1,26 @@
 "Year","1SW (%)","MSW (%)"
-1994,7.9,25.3
-1995,9.9,12.4
-1996,13.2,12.9
-1997,7.7,11.3
-1998,12.1,18.5
-1999,9.8,7.2
-2000,13.5,23.3
-2001,9.7,15.4
-2002,4.1,4.5
-2003,0,12.3
+1994,8.1,27
+1995,9.9,11.8
+1996,12.7,13.4
+1997,7.6,11.3
+1998,12.2,18.5
+1999,10,7.2
+2000,13,21.7
+2001,9.9,15
+2002,4.2,4.5
+2003,0,12.1
 2004,7.7,15.6
 2005,6,20
-2006,7.9,28.6
-2007,10.3,12.8
+2006,7.9,28.3
+2007,10.4,12.8
 2008,4.2,16.1
-2009,1.9,11.1
+2009,1.9,11.3
 2010,7.6,4.6
 2011,7.3,5.6
-2012,8.9,17.7
+2012,8.9,17.9
 2013,4.8,6.7
 2014,8.2,8.8
-2015,8.7,17.1
+2015,8.7,17
 2016,5.3,11.5
-2017,3.8,9
-2018,4.9,11.8
+2017,3.8,9.2
+2018,4.6,10.3

CIEM/Table8_Scorff_2018.csv

@@ -9,28 +9,28 @@
 1991,NA,NA,NA,NA
 1992,NA,NA,NA,NA
 1993,NA,NA,NA,NA
-1994,472,53,0.99,1.65
-1995,643,38,1.18,1.96
-1996,584,61,1.19,1.98
-1997,411,31,0.79,1.31
-1998,508,21,0.89,1.48
-1999,229,66,0.66,1.09
-2000,261,5,0.44,0.73
-2001,286,31,0.59,0.98
-2002,559,20,0.97,1.61
-2003,223,38,0.52,0.83
-2004,1020,53,1.84,2.91
-2005,418,99,1.1,1.74
-2006,815,73,1.61,2.55
-2007,433,80,1.04,1.65
-2008,272,71,0.75,1.19
-2009,256,102,0.86,1.36
-2010,696,61,1.37,2.17
-2011,354,194,1.42,2.25
-2012,344,115,1.06,1.49
-2013,570,96,1.33,1.93
-2014,624,123,1.53,2.23
-2015,525,139,1.45,2.11
-2016,499,69,1.1,1.59
-2017,786,125,1.79,2.61
-2018,267,102,0.88,1.28
+1994,460,47,0.95,1.58
+1995,640,40,1.19,1.97
+1996,609,57,1.21,2.01
+1997,413,29,0.78,1.3
+1998,500,21,0.88,1.47
+1999,224,65,0.65,1.07
+2000,273,5,0.46,0.77
+2001,277,31,0.58,0.96
+2002,541,20,0.94,1.56
+2003,226,39,0.53,0.84
+2004,1022,53,1.84,2.92
+2005,418,98,1.1,1.74
+2006,815,75,1.62,2.56
+2007,431,80,1.04,1.64
+2008,272,72,0.75,1.19
+2009,256,100,0.86,1.36
+2010,698,60,1.37,2.17
+2011,353,190,1.4,2.23
+2012,345,113,1.05,1.48
+2013,572,95,1.33,1.93
+2014,629,123,1.54,2.24
+2015,523,140,1.45,2.11
+2016,493,68,1.08,1.57
+2017,775,124,1.77,2.58
+2018,283,121,0.99,1.43

CIEM/Table9_Scorff_2018.csv

@@ -8,29 +8,29 @@
 1990,NA,NA,NA
 1991,NA,NA,NA
 1992,NA,NA,NA
-1993,NA,510,NA
-1994,NA,704,NA
-1995,6257,615,9.83
-1996,1991,432,21.7
-1997,9984,574,5.75
-1998,4767,234,4.91
-1999,2613,292,11.17
-2000,3177,306,9.63
-2001,11980,597,4.98
-2002,1240,276,22.26
-2003,10130,1119,11.05
-2004,7829,491,6.27
+1993,NA,500,NA
+1994,NA,697,NA
+1995,6257,638,10.2
+1996,1991,434,21.8
+1997,9984,565,5.66
+1998,4767,229,4.8
+1999,2613,304,11.63
+2000,3177,297,9.35
+2001,11980,580,4.84
+2002,1240,279,22.5
+2003,10130,1120,11.06
+2004,7829,493,6.3
 2005,10760,895,8.32
-2006,7156,504,7.04
-2007,7550,374,4.95
-2008,10540,317,3.01
-2009,13680,890,6.51
-2010,10530,469,4.45
+2006,7156,503,7.03
+2007,7550,372,4.93
+2008,10540,316,3
+2009,13680,888,6.49
+2010,10530,466,4.43
 2011,8854,440,4.97
-2012,8144,693,8.51
-2013,8491,763,8.99
-2014,10240,594,5.8
-2015,6621,624,9.42
-2016,9775,888,9.08
+2012,8144,695,8.53
+2013,8491,769,9.06
+2014,10240,591,5.77
+2015,6621,617,9.32
+2016,9775,896,9.17
 2017,6268,NA,NA
 2018,4888,NA,NA

Scorff/Bilan_Scorff_2018.csv

@@ -0,0 +1,27 @@
+"Year","Parr 0+","Smolts","1SW (tot returns)","MSW (tot returns)","1SW (escapment)","MSW (escapment)"
+1993,10580,NA,NA,NA,NA,NA
+1994,19790,NA,508,75,464,49
+1995,9995,6257,769,92,651,40
+1996,13880,1991,724,85,609,60
+1997,9347,9984,455,70,408,29
+1998,6448,4767,565,27,493,21
+1999,10760,2613,257,93,230,62
+2000,20430,3177,317,45,275,5
+2001,3205,11980,315,40,280,31
+2002,18300,1240,566,22,541,20
+2003,14000,10130,229,58,227,39
+2004,24780,7829,1117,65,1022,53
+2005,14570,10760,452,130,417,99
+2006,15850,7156,887,107,814,75
+2007,25910,7550,483,94,431,80
+2008,21950,10540,286,88,272,73
+2009,17820,13680,262,116,256,101
+2010,22050,10530,765,65,698,60
+2011,34300,8854,385,213,351,191
+2012,32270,8144,381,145,345,113
+2013,25790,8491,603,104,571,95
+2014,26490,10240,686,136,628,122
+2015,45145,6621,599,177,525,141
+2016,20870,9775,620,87,495,69
+2017,24790,6268,950,143,776,124
+2018,16750,4888,301,146,283,121

Scorff/adult/analyse_adult.R

@@ -62,7 +62,7 @@ nChains = 2 #length(inits) # Number of chains to run.
 adaptSteps = 1000 # Number of steps to "tune" the samplers.
 nburnin=5000 # Number of steps to "burn-in" the samplers.
 nstore=10000 # Total number of steps in chains to save.
-nthin=10 # Number of steps to "thin" (1=keep every step).
+nthin=20 # Number of steps to "thin" (1=keep every step).
 #nPerChain = ceiling( ( numSavedSteps * thinSteps ) / nChains ) # Steps per chain.
 
 ### Start of the run ###