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ondemand.osc.edu/apps/dashboard/projects/QCHEM/.ondemand/manifest.yml
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--- | ||
id: rndy3vti | ||
name: QChem template | ||
description: 'This is an example project using QChem software.' | ||
icon: fas://vial |
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ondemand.osc.edu/apps/dashboard/projects/QCHEM/.ondemand/scripts/7c4d6ilx/form.yml
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--- | ||
title: Simple QChem job | ||
created_at: 1709137595 | ||
form: | ||
- auto_accounts | ||
- auto_scripts | ||
- auto_batch_clusters | ||
attributes: | ||
auto_accounts: | ||
options: | ||
- - PZS1118 | ||
- PZS1118 | ||
- data-option-for-cluster-cardinal: false | ||
- - PZS0715 | ||
- PZS0715 | ||
- data-option-for-cluster-cardinal: false | ||
- - PZS0714 | ||
- PZS0714 | ||
- {} | ||
- - PZS1117 | ||
- PZS1117 | ||
- data-option-for-cluster-ascend: false | ||
data-option-for-cluster-cardinal: false | ||
- - PAS1604 | ||
- PAS1604 | ||
- data-option-for-cluster-ascend: false | ||
data-option-for-cluster-cardinal: false | ||
value: PZS0715 | ||
label: Account | ||
help: '' | ||
required: false | ||
auto_scripts: | ||
options: | ||
- - qchem.sh | ||
- "/users/PZS0714/johrstrom/ondemand/data/sys/dashboard/projects/rndy3vti/qchem.sh" | ||
directory: "/users/PZS0714/johrstrom/ondemand/data/sys/dashboard/projects/rndy3vti" | ||
value: "/users/PZS0714/johrstrom/ondemand/data/sys/dashboard/projects/rndy3vti/qchem.sh" | ||
label: Script | ||
help: '' | ||
required: false | ||
auto_batch_clusters: | ||
options: | ||
- ascend | ||
- cardinal | ||
- owens | ||
- pitzer | ||
value: owens | ||
exclude_options: | ||
- pitzer | ||
- cardinal | ||
- ascend | ||
fixed: true | ||
label: Cluster | ||
help: '' | ||
required: false |
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#!/bin/bash | ||
|
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# | ||
# This is a sample script for running a basic Q-Chem job. | ||
# The only thing you need to modify is 'sample' here | ||
# | ||
export INPUTFILENAME="sample" | ||
|
||
# | ||
# replace 'sample' with the actual name of your input file. | ||
# | ||
module load intel | ||
module load mvapich2 | ||
module load qchem | ||
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# copy input file to $TMPDIR | ||
cp $INPUTFILENAME.inp $TMPDIR | ||
cd $TMPDIR | ||
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# QChem guide at | ||
# http://www.q-chem.com/qchem-website/manual/qchem43_manual/sect-running.html | ||
# | ||
# Not all calculation types can be run in parallel with MPI. | ||
# | ||
# Temporary hack to get multinode jobs running - it is not yet | ||
# known whether multinode qchem requires a global filesystem. | ||
# setenv QCLOCALSCR $TMPDIR | ||
# export QCSCRATCH=$TMPDIR | ||
|
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qchem -np $SLURM_NTASKS $INPUTFILENAME.inp | ||
ls -al |
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$comment | ||
ethene | ||
$end | ||
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$molecule | ||
0 1 | ||
C -2.3620772 0.9207308 0.2821606 | ||
C -1.0130626 0.5278664 -0.2865418 | ||
H -2.6220345 1.9481860 -0.0474867 | ||
H -3.1392310 0.2143160 -0.0767561 | ||
H -0.7529560 -0.4993875 0.0434971 | ||
H -0.2358785 1.2345592 0.0718086 | ||
$end | ||
|
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$rem | ||
BASIS = 6-31G* | ||
EXCHANGE = HF | ||
GUI = 2 | ||
JOB_TYPE = Optimization | ||
PURECART = 2222 | ||
$end | ||
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@@@ | ||
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$molecule | ||
read | ||
$end | ||
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$rem | ||
basis 6-31G* | ||
exchange hf | ||
molden_format true | ||
print_orbitals true | ||
$end |