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Analytical Advection in jit#1612

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erikvansebille wants to merge 60 commits intomasterOceanParcels/Parcels:masterfrom analyticaladvection_in_jitOceanParcels/Parcels:analyticaladvection_in_jitCopy head branch name to clipboard

+28,100-26,814

Commits

Commits on Jul 16, 2024

• First attempt to create header-file for analytical advection in JIT

  erikvansebille

  committed
  91fb4e0

Commits on Jul 18, 2024

• First semi-complete C-version of analytical-advection (not working)

  erikvansebille

  committed
  90e1190

• Fixing customed_Cfunc_header_test to use particle_dlon

  erikvansebille

  committed
  81d7c1d

Commits on Jul 19, 2024

• Fixing small but important bug in advection computation

  erikvansebille

  committed
  314493a

• Using functions for computing ds and rs

  erikvansebille

  committed
  760fe58

Commits on Jul 22, 2024

• Adding support for dt<0

  erikvansebille

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  f48d052

• Adding 3D support to analyticaladvection

  erikvansebille

  committed
  6e96fe3

• renaming xgrid_loc, ygrid_loc to px, py

  erikvansebille

  committed
  ebd11cb

• Automatic loading of library when calling AdvectionAnalytical in JIT

  erikvansebille

  committed
  2a67fd1

• Updating function names for future support of 2D

  erikvansebille

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  beb1a0a

• Implementing separate 2D kernel for JIT AnalyticalAdvection

  erikvansebille

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  eed3422

• Support for 2D JIT AnalyticalAdvection in kernel.py

  erikvansebille

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  1fb9de2

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  committed
  bfab79c

Commits on Jul 23, 2024

• FIxing timevarying flow in 2D mode

  erikvansebille

  committed
  cd325b8

• Setting include_dirs to inlcude application_kernels

  erikvansebille

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  5c03327

• Fixing 2D analyticaladvection to work with and without time

  erikvansebille

  committed
  1f56ec9

• Adding particle.ti as function input

  erikvansebille

  committed
  acba3fd

Commits on Jul 25, 2024

• Fixing xi sampling code, and making unit test more subtle

  erikvansebille

  committed
  47f50a0

• Fixing calling analyticaladvection with general particle.xi

  erikvansebille

  committed
  d2c27f3

• Fixing small bug in jit analyticaladvection

  erikvansebille

  committed
  c769886

Commits on Jul 26, 2024

• Fixing AnalyticalAdvection Kernels to also work well for negative speeds

  erikvansebille

  committed
  2bc9af3

• Combining AnalyticalAdvection in 2D and 3D JIT into one C function

  erikvansebille

  committed
  74b0d83

• Using particle_ddepth in analyticaladvection

  erikvansebille

  committed
  0edacc5

• FIxing Scipy AnalyticalAdvection to add to dlon,dlat,ddepth instead of overwrite

  erikvansebille

  committed
  ff57384

• Updating AnalyticalAdvection tutorial

  erikvansebille

  committed
  d4c9a6a

• Fixing include statement in codegenerator

  erikvansebille

  committed
  96e6176

• Support for Curvilinear Grids in AnalyticalAdvection

  erikvansebille

  committed
  ae9f681

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  committed
  b2406fe

• Updating to change GridCode -> GridType

  Show description for 116416b
  erikvansebille

  committed
  116416b

• Generalising gridindexingtype for AnalyticalAdvection in JIT

  erikvansebille

  committed
  1fcf875

Commits on Jul 29, 2024

• Also writing first time of simulation in AnalyticalAdvection

  erikvansebille

  committed
  2863265

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  committed
  c297795

• Moving c1,c2,c3,c4 calculation outside flow3D if-loop

  erikvansebille

  committed
  3913277

• Changing gcode -> gtype in advectionanalytical.h

  erikvansebille

  committed
  46b9675

Commits on Jul 31, 2024

• setting counter inside for-loop for reduced clutter

  erikvansebille

  committed
  abbf683

Commits on Aug 2, 2024

• Fixing bug in backward AnalyticalAdvection where wrong cell was used

  erikvansebille

  committed
  6203413

Commits on Aug 12, 2024

• Fixing grid search bug, and increasing tolerance for grid search

  erikvansebille

  committed
  e24041f

• Finding correct cell for analyticaladvection in a loop

  erikvansebille

  committed
  c28a4df

Commits on Aug 13, 2024

• Adding support for time-evolving fields in cell search

  erikvansebille

  committed
  8f34f69

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  committed
  2f4cae3

• Update tutorial_advection to new parcels import

  erikvansebille

  committed
  317172c

Commits on Aug 16, 2024

• Merge branch 'master' into analyticaladvection_in_jit

  VeckoTheGecko

  committed
  6bbbe70

• Add noqa flags

  VeckoTheGecko

  committed
  0a98f39

• Using NEMO cell edges (e1v, e2u etc) in calculation of fluxes

  Show description for 99d94b2
  erikvansebille

  committed
  99d94b2

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  authored
  405cc6d

• Merge branch 'analyticaladvection_in_jit' of https://github.com/OceanParcels/parcels into analyticaladvection_in_jit

  erikvansebille

  committed
  c5fe559

Commits on Aug 26, 2024

• Fixing analyticaladvection to expect grid sizes in Nemo format

  erikvansebille

  committed
  c025d94

• Updating test_advection to use nemo gridsizes for AA

  erikvansebille

  committed
  2ea2c73

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  committed
  af46e0e

• Adding comment to also update Scipy AA code

  erikvansebille

  committed
  a1750d5

• Fixing outofbounds test for flow3D == 0

  erikvansebille

  committed
  f5c0e95

• Updating analyticaladvection tutorial to use Nemo cell edge convention

  erikvansebille

  committed
  4505636

Commits on Aug 27, 2024

• Adding mesh_mask_edges file for AA in nemo_curvilinear

  erikvansebille

  committed
  f557e3c

• Updating mesh_mask_edges filename

  erikvansebille

  committed
  71eb3f7

• Adding cell edges to AnalyticalAdvection in example_peninsula

  erikvansebille

  committed
  fd7383f

Commits on Aug 30, 2024

• Merge branch 'master' into analyticaladvection_in_jit

  erikvansebille

  committed
  f0974d4

• Changing time interpolation scheme to use intermediate timesteps better

  erikvansebille

  committed
  c98161e

• Merge branch 'analyticaladvection_in_jit' of https://github.com/OceanParcels/parcels into analyticaladvection_in_jit

  erikvansebille

  committed
  adce434

• Renaming direction to time_direction throughout

  erikvansebille

  committed
  4578997

Commits on Sep 23, 2024

• Adding support for MITGCM grids in analyticaladvection.h

  erikvansebille

  committed
  88aa327