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* Add OSP github actions + remove Appveyor files + remove docs/ (will be build on gh-pages) + update badges * Build the pkgdown website on PR Will not push to gh-pages during PR, only when merged + remove unused action * allowing vignette execution error * Update snapshots with latest tlf version * fix typos * Add a workflow step to increase dev version automatically + refactor all jobs in one main workflow
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| *.html |
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| name: bump-dev-version | ||
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| on: | ||
| workflow_call: | ||
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| jobs: | ||
| bump-dev-version: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| permissions: write-all | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
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| - name: Setup R | ||
| uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
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| - name: Install packages | ||
| run: | | ||
| install.packages("usethis") | ||
| shell: Rscript {0} | ||
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| - name: Change DESCRIPTION file | ||
| run: | | ||
| if(usethis:::is_dev_version()){ | ||
| desc::desc_set_version(version = usethis:::bump_version()[["dev"]]) | ||
| } | ||
| shell: Rscript {0} | ||
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| - name: commit modified DESCRIPTION file | ||
| uses: EndBug/add-and-commit@v9 | ||
| if: ${{ success() }} | ||
| with: | ||
| message: '🤖 Bump development version.' | ||
| default_author: github_actions | ||
| add: 'DESCRIPTION' |
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| name: Main-Workflow | ||
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| on: | ||
| push: | ||
| branches: [main, develop] | ||
| pull_request: | ||
| branches: [main, develop] | ||
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| jobs: | ||
| bump-dev-version: # only do that when actually merging in main/develop branch | ||
| if: github.event_name != 'pull_request' | ||
| uses: ./.github/workflows/bump-dev-version.yaml | ||
| R-CMD-Check: | ||
| if: ${{ always() }} | ||
| needs: [bump-dev-version] | ||
| uses: Open-Systems-Pharmacology/Workflows/.github/workflows/R-CMD-check-build.yml@main | ||
| with: | ||
| install-pksim: true | ||
| install-rClr: true | ||
| extra-packages: | | ||
| ospsuite.utils=github::Open-Systems-Pharmacology/OSPSuite.RUtils | ||
| tlf=github::Open-Systems-Pharmacology/TLF-Library | ||
| test-coverage: | ||
| if: ${{ always() }} | ||
| needs: [R-CMD-Check] | ||
| uses: Open-Systems-Pharmacology/Workflows/.github/workflows/test-pkg-and-coverage.yml@main | ||
| with: | ||
| install-pksim: true | ||
| install-rClr: true | ||
| extra-packages: | | ||
| ospsuite.utils=github::Open-Systems-Pharmacology/OSPSuite.RUtils | ||
| tlf=github::Open-Systems-Pharmacology/TLF-Library | ||
| pkgdown: | ||
| if: ${{ always() }} | ||
| needs: [R-CMD-Check] | ||
| uses: Open-Systems-Pharmacology/Workflows/.github/workflows/pkgdown.yml@main | ||
| with: | ||
| install-pksim: true | ||
| install-rClr: true | ||
| extra-packages: | | ||
| ospsuite.utils=github::Open-Systems-Pharmacology/OSPSuite.RUtils | ||
| tlf=github::Open-Systems-Pharmacology/TLF-Library |
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| # History files | ||
| .Rhistory | ||
| .Rapp.history | ||
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| deploy/ | ||
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| packages/ | ||
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| temp/ | ||
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| tests/playground/ | ||
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| # Session Data files | ||
| .RData | ||
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| # Example code in package build process | ||
| *-Ex.R | ||
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| # Output files from R CMD build | ||
| /*.tar.gz | ||
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| # Output files from R CMD check | ||
| /*.Rcheck/ | ||
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| # RStudio files | ||
| .Rproj.user/ | ||
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| # produced vignettes | ||
| vignettes/*.html | ||
| vignettes/*.pdf | ||
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| # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3 | ||
| .httr-oauth | ||
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| # knitr and R markdown default cache directories | ||
| /*_cache/ | ||
| /cache/ | ||
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| # Temporary files created by R markdown | ||
| *.utf8.md | ||
| *.knit.md | ||
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| # Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html | ||
| rsconnect/ | ||
| doc | ||
| Meta | ||
| # History files | ||
| .Rhistory | ||
| .Rapp.history | ||
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| deploy/ | ||
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| packages/ | ||
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| temp/ | ||
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| tests/playground/ | ||
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| # Session Data files | ||
| .RData | ||
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| # Example code in package build process | ||
| *-Ex.R | ||
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| # Output files from R CMD build | ||
| /*.tar.gz | ||
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| # Output files from R CMD check | ||
| /*.Rcheck/ | ||
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| # RStudio files | ||
| .Rproj.user/ | ||
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| # produced vignettes | ||
| vignettes/*.html | ||
| vignettes/*.pdf | ||
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| # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3 | ||
| .httr-oauth | ||
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| # knitr and R markdown default cache directories | ||
| /*_cache/ | ||
| /cache/ | ||
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| # Temporary files created by R markdown | ||
| *.utf8.md | ||
| *.knit.md | ||
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| # Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html | ||
| rsconnect/ | ||
| doc | ||
| Meta | ||
| docs |
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