v0.3

Project Fedex release.

What's Changed

• Add initial implementations of Transformation, AlchemicalNetwork, Protocol; stubs for Executor components by @dotsdl in #13
• Fix coveragerc ellipsis exclusion by @dwhswenson in #28
• to_dict on unitted quantities should use to_tuple by @dwhswenson in #31
• Change ion defaults by @dwhswenson in #32
• Raw data storage by @dwhswenson in #21
• added Failure result by @richardjgowers in #25
• Reorganized component modules within a submodule of their own by @dotsdl in #41
• Solvent: make concentration always a unit, even if 0.0M by @richardjgowers in #40
• to_dict serialization of SmallMoleculeComponent by @richardjgowers in #43
• remove python 3.8 CI by @richardjgowers in #44
• Serialization and tokenization via GufeTokenizable by @dotsdl in #39
• rename base to tokenize_base by @richardjgowers in #47
• DAGs now constructed using ProtocolUnit inputs; inputs can be mapped into keyword arguments of ProtocolUnit._execute by @dotsdl in #36
• update for offtk 0.11 by @richardjgowers in #53
• Added tokenization, serialization methods for AlchemicalNetwork, Transformation by @dotsdl in #55
• Raise NotImplementedError in abstract classmethods by @dwhswenson in #58
• Old offtk by @richardjgowers in #59
• Use the gufe key for DAG name, not hash by @dwhswenson in #61
• Protein serialization by @dwhswenson in #45
• Use clear names openff-toolkit versions in CI by @dwhswenson in #65
• Small fix to typing of TOKENIZABLE_REGISTRY by @dotsdl in #67
• Add init.py to vendor/ by @dwhswenson in #75
• Add test for roundtrip with cleared registry by @dwhswenson in #69
• Add GufeTokenizableTestsMixin to TestTransformation by @dwhswenson in #74
• Protein rework by @richardjgowers in #77
• Performance improvements to tokenization, deterministic sorting by @dotsdl in #76
• added ABCs for AtomMapping behaviour by @richardjgowers in #35
• Add custom_json from OpenPathSampling / SimStore by @dwhswenson in #68
• Add tokenization to top namespace by @richardjgowers in #80

Full Changelog: v0.2...v0.3