CI #123
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: "CI" | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| schedule: | |
| # At 07:00 UTC on Monday and Thursday. | |
| - cron: "0 7 * * *" | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash -leo pipefail {0} | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.os}} | |
| name: "💻-${{matrix.os }} 🐍-${{ matrix.python-version }}" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "macos-13"] | |
| python-version: | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get current date | |
| id: date | |
| run: echo "date=$(date +%Y-%m-%d)" >> "${GITHUB_OUTPUT}" | |
| - name: "Setup Micromamba" | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: openfe_analysis_env | |
| cache-environment: true | |
| cache-downloads: true | |
| cache-environment-key: environment-${{ steps.date.outputs.date }} | |
| cache-downloads-key: downloads-${{ steps.date.outputs.date }} | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| init-shell: bash | |
| - name: "Install" | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: "Restore pooch test data cache" | |
| id: cache-testdata-restore | |
| uses: actions/cache/restore@v3 | |
| with: | |
| path: | | |
| ~/.cache/openfe_analysis/ | |
| key: ${{ runner.os }} | |
| - name: "Test imports" | |
| run: | | |
| python -Ic "import openfe_analysis; print(openfe_analysis.__version__)" | |
| - name: "Run tests" | |
| run: | | |
| pytest -n auto -v --cov=openfe_analysis --cov-report=xml --durations=10 | |
| - name: "Save pooch test data cache" | |
| id: cache-testdata-save | |
| uses: actions/cache/save@v3 | |
| with: | |
| path: | | |
| ~/.cache/openfe_analysis/ | |
| key: ${{ runner.os }} | |
| - name: codecov | |
| if: ${{ github.repository == 'OpenFreeEnergy/openfe_analysis' | |
| && github.event_name == 'pull_request' }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| fail_ci_if_error: false | |
| verbose: true |