This is the official distribution of the legacy Mendel package, version 16.0.
Mendel is a comprehensive package for the statistical analysis of qualitative and quantitative genetic traits. See below for the anaylsis options available.
- Linux: Mendel-160_linux_intel_64.tar.gz
- MacOS: Mendel-160_Mac_Installer.dmg
- Windows: Mendel-160-win-setup.exe
MULTIPOINT_MAPPING = 1 (Mapping Markers)
LOCATION_SCORES = 2 (Location Scores)
CREATE_HAPLOTYPES = 3 (Pedigree Haplotyping)
COMPUTE_SHARING_STATISTICS = 4 (NPL)
FIND_GENOTYPING_ERRORS = 5 (Mistyping)
ESTIMATE_ALLELE_FREQUENCIES = 6 (Allele Frequencies)
GENETIC_COUNSELING = 7 (Risk Prediction)
GAMETE_COMPETITION_MODEL = 8 (Gamete Competition)
PATERNITY_OR_GRAPH_TESTING = 9 (Pedigree Selection)
COMPUTE_KINSHIP_MATRIX = 10 (Kinship)
TEST_GENETIC_EQUILIBRIUM = 11 (Genetic Equilibrium)
TEST_CASES_AND_CONTROLS = 12 (Association by Permutation)
TRANSMISSION_DISEQUILIBRIUM = 13 (TDT)
ESTIMATE_PENETRANCES = 14 (Penetrances)
ETHNIC_ADMIXTURE = 15 (Ethnic Admixture)
COMBINE_ALLELES = 16 (Combining Alleles)
GENE_DROPPING = 17 (Gene Dropping)
COMBINE_LOCI = 18 (Combining Loci)
POLYGENIC_QTL = 19 (Variance Components)
QTL_ASSOCIATION = 20 (QTL Association)
TRIM_PEDIGREES = 21 (Trim Pedigrees)
ASSOCIATION_GIVEN_LINKAGE = 22 (Association Given Linkage)
SNP_IMPUTATION = 23 (SNP Imputation)
SNP_ASSOCIATION = 24 (GWAS)
FILE_CONVERSION = 25 (File Conversion)
MFGI = 26 (MFG)
INBRED_STRAINS = 27 (Inbred Strains)
SIMULATE_TRAITS = 28 (Simulate Traits)
PED_GWAS = 29 (Ped GWAS)
QMFG_LRT = 30 (QMFG LRT)
QMFG_SCORE = 31 (QMFG Score)
For publications please cite the following reference:
Lange K, Papp JC, Sinsheimer JS, Sripracha R, Zhou H, Sobel EM. Mendel: the Swiss army knife of genetic analysis programs. Bioinformatics. 2013 Jun 15;29(12):1568-70. doi: 10.1093/bioinformatics/btt187. Epub 2013 Apr 22. PMID: 23610370; PMCID: PMC3673222.