mpox-seek
New feature: plot coverage along the genome.
Added a new option called, --plot-coverage, to create per-sample coverage plots along the amplified region of the genome.
- Updated the docker image and conda environment for new required dependencies: deeptools, samtools, and pygenometracks.
- To use this verion of the pipeline, please re-build or create a new conda environment using the following conda environment file.
- Added new rules to convert BAM to BigWig using deeptools bamCoverage and visualizing the coverage with pygenometracks (from the authors of DeepTools).
Full Changelog: v0.1.0...v0.2.0