This folder contains scripts for processing raw accelerometer data from participants with repeated measurements.
Please note that:
- This code is in active development.
- It is shared as-is to enable scientific reproducibility and 'open science'.
- This code is not shared for the purpose of general use; any use is strictly at your own risk.
- In particular, it is not an authoritative source, and has not been reviewed or tested.
Please share comments, suggestions and errors/bugs found, either directly on the GitHub page or by emailing rosemary.walmsley@gtc.ox.ac.uk.
- Generate command files with
generate_command_files.sh
- Generate bash scripts with
write_cluster_scripts.py
- Write a
submit_all.sh
script for each command script directory, as pertemplate_submit_all.sh
cd
to each command script directory and runqsub submit_all.sh
- Note that runs
willetts_full
andwilletts_reduced
only run after runwalmsley
has finished, as all three use the sameepoch
files. - Use
collate_files.py
to collate files into single csv files.