For a description of the method development see: https://plantmethods.biomedcentral.com/articles/10.1186/s13007-019-0445-5 The scripts are updated with more efficient software tools, both in memory consumption and run time. A data set is available to play around with. A CoSSA tutorial is added to get familiar with the usage of the method and the scripts
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Comparative Subsequence Sets Analysis (CoSSA) workflows to identify haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data
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