Skip to content
@PMBio

Probabilistic Models in Biology

Popular repositories Loading

  1. scLVM scLVM Public

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

    HTML 103 46

  2. peer peer Public

    Forked from mz2/peer

    A factor analysis package

    C++ 90 38

  3. limix-backup limix-backup Public

    C++ 45 12

  4. pygp pygp Public

    A Gaussian process toolbox in python

    Python 41 9

  5. deepcpg deepcpg Public

    Forked from cangermueller/deepcpg

    Deep neural networks for predicting CpG methylation

    Python 33 11

  6. bicycle bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    Jupyter Notebook 28 1

Repositories

Showing 10 of 49 repositories
  • MB_scSeq Public

    This repo contains scripts for the analysis of scDNA- and scSeq data from LFS medulloblastoma accompanying the manuscript "SINGLE CELL MULTI-OMICS ANALYSIS OF CHROMOTHRIPTIC MEDULLOBLASTOMA HIGHLIGHTS GENOMIC AND TRANSCRIPTOMIC CONSEQUENCES OF GENOME INSTABILITY".

    PMBio/MB_scSeq’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jul 29, 2024
  • deeprvat Public
    PMBio/deeprvat’s past year of commit activity
    Python 19 1 5 3 Updated Jul 23, 2024
  • deeprvat-analysis Public
    PMBio/deeprvat-analysis’s past year of commit activity
    Python 2 0 0 0 Updated Jul 18, 2024
  • bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    PMBio/bicycle’s past year of commit activity
    Jupyter Notebook 28 1 0 0 Updated Jul 17, 2024
  • MetH5Format Public

    HDF5-based container format for Methylation calls from long reads

    PMBio/MetH5Format’s past year of commit activity
    Python 6 MIT 2 3 0 Updated Jan 24, 2024
  • MuDataSeurat Public

    .h5mu files interface for Seurat

    PMBio/MuDataSeurat’s past year of commit activity
    R 22 9 5 1 Updated Nov 28, 2023
  • ase_spermatogenesis Public
    PMBio/ase_spermatogenesis’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 17, 2023
  • MultiOmicsCourse Public
    PMBio/MultiOmicsCourse’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Nov 10, 2023
  • spava Public
    PMBio/spava’s past year of commit activity
    Python 0 0 0 0 Updated Sep 28, 2023
  • mb-nanopore-2022 Public

    Analysis code for publication "Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signature"

    PMBio/mb-nanopore-2022’s past year of commit activity
    Python 6 GPL-3.0 0 1 0 Updated Sep 18, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…