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Pull request to merge MAGNET into dev branch #975

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Pull request to merge MAGNET into dev branch #975

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mkaguer
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@mkaguer mkaguer commented Jul 10, 2024

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@mkaguer
Removed reduce_peaks from _snows
e3e5a34
@mkaguer
Created new _magnet file including filters for magnet extraction
d77cd32
@mkaguer
Now importing filters from _magnet
8d5cedc
@mkaguer
Added unit tests
b2a68a8
@mkaguer
Fixed two pores with same number bug
18b2e5c
@mkaguer
Remove properties from spheres_to_network that are nonsensical
dcad569
@mkaguer
ensur the shape of t_conns is nt by 2
d0349fe
@mkaguer
remove phases from spheres_to_network
6130425
@mkaguer
Added if " __name__" == "__main__" simualtion
a429ac9
@mkaguer
Added parallelization to loops using dask
7c568f2
@mkaguer
Delete junctions with dt < 3
282021a
@mkaguer
Remove erroneous P12 definition
559299a
@mkaguer
Prevent pores from being inserted in constrictions
4460691
@mkaguer
Added simulation to end of file for testing
456d447
@mkaguer
Deleted pores with dt < 3 along long throats
b11626f
@mkaguer
Remove print(d) line
15307b3
@mkaguer
Merge branch 'MAGNET_Mike' into MAGNET_fix_bugs
8aadd99 
# Conflicts:
#	porespy/filters/_magnet.py
@mkaguer
Attempted to fix throats, almost!
29272f9
@mkaguer
Fixed missing throats
cdbabd1
@mkaguer
Merge branch 'dev' into MAGNET_Mike
1f6de58
@mkaguer
Fixed magnet to work with 3D images
15a2bef
@mkaguer
use fft to find junctions
c37d299
@mkaguer
cleaned up find_pore_bodies and find_throat_skeleton
8850ba7
@mkaguer
simplified spheres_to_network in order to speed up
9ad85e5
@mkaguer
Updated test simulation to match changes to functions
bca6f11
@mkaguer
Use Pn_l = Pn_l[0:2] for now
69dac56
@mkaguer
Removed volume and equivalent diamter and added radius
bef86c7
@mkaguer
removed get_tqdm
a7ed3c1
@mkaguer
replace insert_sphere with _insert_disk_at_points
7058112
@mkaguer
Reshape according to number of dimensions
bbedc63
mkaguer and others added 30 commits October 12, 2023 18:38
@mkaguer
Added magnet permeability script and berea.raw image
24280ca
@jgostick
some housekeeping
0bcfcc1
@jgostick
testing on blobs
a1e0023
@jgostick
combing through code
0923740
@jgostick
Merge branch 'dev' into MAGNET_Mike
a0a6f52
@jgostick
adding few changes
f27c82c
@jgostick
adding a big overall script for bentheimer
72f75e4
@mkaguer
new _magnet file with changes discussed on feb 22 with Jeff
4c1a623
@mkaguer
Added get_throat_area method using random walk
62b13e8
@mkaguer
Cleaned up get_throat_area code
1939fd6
@mkaguer
Added adaptive stepping to walk by using dt
36ab54e
@mkaguer
Included throat_area calc in MAGNET wrapper
9d7e724
@mkaguer
Cleaned up magnet wrapper function
803db20
@mkaguer
Cleaned up pore and throat properties in junctions_to_network
dec1cb3
@mkaguer
Cleaned up some remaining FIXME items in _magnet
a2d9e70
@mkaguer
calculate inscribed throat diameter using F_approx
869974a
@mkaguer
Wrote walk in JIT
3612bc3
@mkaguer
Return minimum throat area with magnet extraction
26fce0e
@mkaguer
Rename clipped diameter to equivalent diameter
991b8c3
@mkaguer
Defined MAGNET arguments explicitly for easier debugging
6c243f9
@mkaguer
Edited docstring on walk function
f660c99
@mkaguer
Measuring time it takes to calculate area and print
f0a77c8
@mkaguer
speed up dt and maximum filter by chunking
5dcfef4
@mkaguer
If dt is calculated in find_throat_junctions, use parallel
1b48f80
@mkaguer
Use dt_max for finding pore diameters
c5c7792
@mkaguer
Merge branch 'dev' into MAGNET_Mike
3f83286 
# Conflicts:
#	src/porespy/networks/Berea.raw
#	src/porespy/networks/MAGNET_permeability.py
#	src/porespy/networks/__init__.py
#	src/porespy/networks/_magnet.py
#	src/porespy/networks/script_magnet2D.py
#	src/porespy/networks/script_magnet3D.py
#	src/porespy/networks/script_magnet_steps.py
@mkaguer
Rmoved some scripts that were being ued to test magnet
0fd2e3e
@mkaguer
Removed a berea image
7bb2a4e
@mkaguer
magnet now returns a results object
a2354a9
@mkaguer
Wrote a bunch of unit tests for magnet
12580b2
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@mkaguer @jgostick