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[BFX-533] Release version 1.13.0
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armintoepfer committed Aug 14, 2023
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11 changes: 8 additions & 3 deletions README.md
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Expand Up @@ -21,7 +21,7 @@ Please refer to our [official pbbioconda page](https://github.com/PacificBioscie
for information on Installation, Support, License, Copyright, and Disclaimer.

## Latest Version
Version **1.12.0**: [Full changelog here](#full-changelog)
Version **1.13.0**: [Full changelog here](#full-changelog)

## Usage
_pbmm2_ offers following tools
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## FAQ

### Which minimap2 version is used?
Minimap2 version 2.15 is used, to be specific, SHA1 [c404f49](https://github.com/lh3/minimap2/commit/c404f49569fa2d606b652418ffa4b9743bcaf641).

- pbmm2 ≥v1.13.0: minimap2 v2.26
- pbmm2 ≥v1.13.0: minimap2 v2.15

### When are `pbi` files created?
Whenever the output is of type `xml`, a `pbi` file is being generated.
Expand Down Expand Up @@ -420,7 +422,10 @@ and in the same orientation, which are the only fields that `samtools sort` uses

## Full Changelog

* **1.12.0**:
* 1.13.0:
* Update minimap2 to version 2.26

* 1.12.0:
* Set `--preset CCS` as default
* Change repeated matches trimming to adhere to minimap2 alignment ordering

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2 changes: 1 addition & 1 deletion meson.build
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project(
'pbmm2',
['c', 'cpp'],
version : '1.12.99',
version : '1.13.0',
default_options : [
'buildtype=release',
'warning_level=3',
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