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mptp 0.2.0
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@xflouris xflouris released this 27 Sep 12:39
· 28 commits to master since this release
v0.2.0
d3827c3

Changes

  • Fixed floating point exception error when constructing random trees, caused from dividing by zero
  • Changed allocation from malloc to calloc, as it caused uninitialized variables when converting unrooted trees to rooted when using the MCMC method
  • Fixed sample size for the the AIC with a correction for finite sample sizes

Notes

  1. The pre-compiled linux binary mptp-0.2.0-linux-x86_64.tar.gz is compiled without libgsl support. Therefore the Likelihood Ratio Test (LRT) is disabled for the single-rate PTP model. To use libgsl (and therefore the LRT), please compile from source, given that libgsl is installed on your system.
  2. The file mptp-src-0.2.0.tar.gz contains the mPTP source code and does not require autotools installed.
  3. Files v0.2.0.tar.gz and v0.2.0.zip are generated by GitHub, and require autotools installed (as when cloning the repository).
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