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DESCRIPTION
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DESCRIPTION
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Package: neuroExpressoAnalysis
Type: Package
Title: Marker genes of brain cell types and their use in analysis of whole
tissue data
Version: 1.1
Depends:
R (>= 3.1.2),
ogbox (>= 1.0),
allenBrain,
homologene (>= 1.0),
geneSynonym (>= 1.0),
markerGeneProfile,
viridis (>= 0.3.4),
corpcor (>= 1.6.8),
reshape2 (>= 1.4.1),
ggplot2 (>= 2.1.0),
devtools (>= 1.11.0),
foreach (>= 1.4.3),
parallel (>= 3.1.2),
cluster (>= 2.0.4),
magrittr (>= 1.5),
dplyr (>= 0.5.0),
affy (>= 1.44.0),
compare(>= 0.2-6),
stringr(>= 1.1.0),
preprocessCore (>= 1.28.0),
memoise (>= 1.0.0),
lazyeval (>= 0.2.0),
gplots (>= 3.0.1),
scales (>= 0.4.0),
cowplot (>= 0.6.0),
grid (>= 3.1.2),
gtable(>= 0.2.0),
grDevices(>= 3.1.2),
limma (>= 3.22.7),
doRNG (>= 1.6),
stringi (>= 1.1.2),
oligo (>= 1.38.0),
sva (>= 3.22.0),
XLConnect,
glue,
pheatmap (>= 1.0.9),
VennDiagram,
forcats,
magick,
doSNOW,
jsonlite,
usethis,
gemmaAPI
Imports:
ogbox (>= 1.0)
Suggests:
testthat,
knitr,
rmarkdown
Remotes:
oganm/ogbox,
oganm/allenBrain,
oganm/geneSynonym,
oganm/markerGeneProfile,
oganm/geneSynonym,
oganm/gemmaAPI.R
raivokolde/pheatmap,
bioc::3.5/affy,
bioc::3.5/preprocessCore,
bioc::3.5/limma,
bioc::3.5/oligo,
bioc::3.5/sva
Enhances:
Date: 2016-08-08
Author: Ogan Mancarci
Maintainer: Ogan Mancarci <ogan.mancarci@gmail.com>
Description: Bah
License: GPL-2
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr