Phylopic-v0.0.5

Phylopic Phylopic-v0.0.5

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

Fauxcurrences-v0.1.2

Fauxcurrences Fauxcurrences-v0.1.2

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Logo (#27)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Generate release notes that list what changes in all the packages (#189)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

GBIF-v0.4.5

GBIF GBIF-v0.4.5

Merged pull requests:

• CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot])
• Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot)
• Replace collect by values (#18) (@tpoisot)
• Fix SimpleSDMLayers tests (#19) (@tpoisot)
• CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot])
• Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot)
• CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot])
• Allow additional drivers to the geotiff writer (#47) (@tpoisot)
• [GBIF] add option to look for vector of taxa (#57) (@tpoisot)
• Update the vignette on stats (#58) (@tpoisot)
• Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot)
• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot])
• CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot])
• Add additional metadata to the providers (#72) (@tpoisot)
• Add a Tables.jl interface for layers (#82) (@tpoisot)
• CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot])
• Aggregate code coverage analysis (#87) (@tpoisot)
• Work on the dataset cards (#88) (@tpoisot)
• Add some tests to SimpleSDMLayers (#89) (@tpoisot)
• Merge git tags (#92) (@tpoisot)
• [GBIF] Tables.jl (#96) (@tpoisot)
• [SimpleSDMLayers] cell size (#98) (@tpoisot)
• 📝 README (#100) (@tpoisot)
• CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot])
• Make all layers broadcastable (#103) (@tpoisot)
• 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot)
• CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot])
• CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot])
• CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot])
• CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot])
• CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot])
• Bring Fauxcurrences back in the main package (#137) (@tpoisot)
• CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot])
• Fix clipping with exact coordinates (#144) (@gabrieldansereau)
• 🐛 correct check on layer inner type (#146) (@tpoisot)
• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)
• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Update the contributing guidelines (#177) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)
• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)
• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])
• Change sample and add DistanceToEvent (#207) (@tpoisot)
• semver(layers): fix (#209) (@tpoisot)
• Bug/layers/method overwrite (#215) (@tpoisot)
• CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot])
• CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot])
• CompatHelper: add new compat entry for Statistics at version 1 for package SimpleSDMLayers, (keep existing compat) (#220) (@github-actions[bot])
• CompatHelper: bump compat for MakieCore to 0.7, (keep existing compat) (#221) (@github-actions[bot])
• Phylopic pre-compilation fix (#224) (@tpoisot)
• SurfaceLike -> GridBased (#225) (@tpoisot)
• Bug/sdt/surfacelike (#226) (@tpoisot)

Closed issues:

• Reading certain tiffs with geotiff is wrong if the CRS is not WGS84 (#32)
• Allow options to ArchGDAL driver when saving Geotiff (#30)
• Add layer description to get human-readable description of layer names (#7)
• Add a function to get the URL or reference for a data provider (#8)
• Add a way to remove observations that are documented absences (#9)
• CHELSA2 NODATA is incompatible with data type (#10)
• Move pseudo-absence code to the top-level package (#11)
• Unify distance generation in Fauxcurrences and pseudo-absence code (#12)
• Update the GBIF docstrings (#13)
• Update the model cards (#14)
• Method to get the values in a layer should be values and not collect (#16)
• Fix SimpleSDMLayers tests (#17)
• Migrate issues about possible datasets to this repo (#28)
• Clean the code handling the CRS transformation in geotiff (#35)
• The order of arguments to read/save geotiffs make no sense (#38)
• Vignette on scaling and quantiles (#48)
• Add a method to get occurences for several taxa (#50)
• The vignettes section is getting very large (#60)
• The WorldClim tests are going to fail a lot (#61)
• Find a way to aggregate the code coverage (#62)
• Surface area of cells (#93)
• Replace data frames function by a Tables.jl interface (#94)
• Prepare repo for release of new versions (#95)
• Add Boolean operations on Boolean layers (#99)
• Link to documentation in the original repositories (#101)
• Update plotting code to work with Makie as a default (#104)
• TagBot trigger issue (#140)
• Check the weight matrices in Fauxcurrences (#142)
• Wrong coordinates returned when clipping with exact coordinates (#143)
• IO not exported? (#145)
• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Integrate with Phylopic (#157)
• Update documentation (#158)
• geotiff driver kwarg (#160)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)
• Using an unsupported keyword gives an error (but not the right one) (#186)
• No method for -layer (#187)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)
• sample does not generate the expected number of background points (#194)
• cellsize returns NaN for some cells more or less at random (#198)
• Distance to observations for background points (#206)
• Check SurfaceRangeEnveloppe (#208)
• Array for a vector of layers is slow (#212)
• Fauxcurrence overload issue (#214)
• CRS (#222)
• Phylopic.jl precompiles infinitely without stopping (#223)

v0.0.10

SpeciesDistributionToolkit v0.0.10

Diff since v0.0.9

v0.0.9

SpeciesDistributionToolkit v0.0.9

Diff since v0.0.8

Merged pull requests:

• Update the contributing guidelines (#177) (@tpoisot)
• Change sample and add DistanceToEvent (#207) (@tpoisot)

Closed issues:

• sample does not generate the expected number of background points (#194)
• Distance to observations for background points (#206)

v0.0.8

SpeciesDistributionToolkit v0.0.8

Diff since v0.0.7

Closed issues:

• Using an unsupported keyword gives an error (but not the right one) (#186)

Merged pull requests:

• bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot)
• Improving WithinRadius performance (#196) (@gottacatchenall)
• Adding Offset Arrays back as a dependency (#197) (@gottacatchenall)
• Build issue on phylopic (#199) (@tpoisot)
• fix(GBIF): some records are missing a synonym field (#200) (@tpoisot)
• CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot])

v0.0.7

SpeciesDistributionToolkit v0.0.7

Diff since v0.0.6

Closed issues:

• No method for -layer (#187)
• Default writer should be GTiff (#190)
• Writing a layer is creating a file with no extension (#192)

Merged pull requests:

• CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot])
• CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot])
• Add methods to invert a layer (#188) (@tpoisot)
• Fixes the geotiff open (#191) (@tpoisot)

v0.0.6

SpeciesDistributionToolkit v0.0.6

Diff since v0.0.5

Closed issues:

• Integrate with Phylopic (#157)
• downloaders break when imported as part of another module (#164)
• GBIF queries get converted (for some reason) (#165)
• Add method to download the high-res png (#171)
• Add method to generate an attribution file OR string for Phylopic (#172)
• List images by license when searching for silhouettes (#173)
• Wrong return format for names when items=1 (#174)
• Phylopic/GBIF integration (#175)
• Get the website to build for stable versions (#178)

Merged pull requests:

• Fix the GBIF issue for single argument queries (#166) (@tpoisot)
• Fix the naming issue when imported from a submodule (#167) (@tpoisot)
• Phylopic wrapper (#169) (@tpoisot)
• Read the GBIF enums from the API endpoints (#170) (@tpoisot)
• compat(phylopic): add compat entries (#176) (@tpoisot)
• Add GBIF/Phylopic integration (#179) (@tpoisot)
• Build website for tagged version (#180) (@tpoisot)

v0.0.5

SpeciesDistributionToolkit v0.0.5

Diff since v0.0.4

Closed issues:

• Split a layer into tiles (#147)
• Add a test for clipping with exact coordinates (#149)
• Avoid using stride when clipping (#150)
• Add expand options to clip (#151)
• Stitch returns the wrong bounding box in the end (#154)
• Update documentation (#158)
• geotiff driver kwarg (#160)

Merged pull requests:

• ✨ Split a layer into tiles (#148) (@tpoisot)
• Test for clipping with natural coordinates (#152) (@gabrieldansereau)
• 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot)
• 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot)
• GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot)
• ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau)
• compression/format kwargs for geotiffs (#161) (@gottacatchenall)
• fix typos (#162) (@spaette)
• Update the documentation (#163) (@tpoisot)

v0.0.4

SpeciesDistributionToolkit v0.0.4

Diff since v0.0.3

Closed issues:

• IO not exported? (#145)

Merged pull requests:

• 🐛 correct check on layer inner type (#146) (@tpoisot)