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How to add references

  • We use Zotero for references management - in order to get access to the shared library, give your username to Tim
  • We use the Better BibTeX plugin for citation key generations
  • The citation key format we use is meant to convey information on the author, date, year, and title. It must be set in the Better BibTeX preferences as
[auth:fold][year][title:fold:nopunctordash:skipwords:lower:select=1,1:substring=1,3:capitalize][title:fold:nopunctordash:skipwords:lower:select=2,2:substring=1,3:capitalize]
  • We also use the same package to automatically export the manuscript references to the root of the manuscript folder, using the name references.bib - this ensures that everyone will be working from the same set of references

Manuscript versions

A Markdown Primer

This is a citation: @HampAnde15. We can also have citations in brackets: [@HampAnde15].

There is an equation, which we can cite with @eq:eq1, or we can cite a figure with @fig:biomes.

$$J'(p) = \frac{1}{\text{log}(S)}\times\left(-\sum p \text{log}(p)\right)$$ {#eq:eq1}

Inline eq. look like this $\mathbf{U}\cdot\mathbf{\Sigma}\cdot\mathbf{V}^T$

![This is the legend of the figure](figures/conceptual.png){#fig:conceptual}