Fix Pytest error in test cases due to Numpy 2.0 incompatibility #707
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: master | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| name: Building on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest, ubuntu-latest, macos-13, macos-14] | |
| # python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| versions: | |
| - { python: "3.8", numpy: 1.22.4, scipy: 1.10.1 } | |
| - { python: "3.9", numpy: 1.22.4, scipy: 1.13.1 } | |
| - { python: "3.10", numpy: 1.22.4, scipy: 1.13.1 } | |
| - { python: "3.11", numpy: 1.24.3, scipy: 1.13.1 } | |
| - { python: "3.12", numpy: 1.26.4, scipy: 1.13.1 } | |
| steps: | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v2 | |
| id: cpu-cores | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.versions.python }} | |
| if: ${{ (matrix.os != 'macos-14') || ((matrix.os == 'macos-14') && (matrix.versions.python != '3.8') && (matrix.versions.python != '3.9')) }} | |
| uses: actions/setup-python@v5 | |
| id: pysetup | |
| with: | |
| python-version: ${{ matrix.versions.python }} | |
| cache: 'pip' | |
| - name: Setup Python 3.8-3.9 - macos-arm | |
| if: ${{ (matrix.os == 'macos-14') && ((matrix.versions.python == '3.8') || (matrix.versions.python == '3.9')) }} | |
| run: | | |
| brew update | |
| brew install python@${{ matrix.versions.python }} | |
| curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py | |
| python${{ matrix.versions.python }} get-pip.py | |
| - name: Create Python alias for Windows | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| $newPath = "${{ steps.pysetup.outputs.python-path }}".Replace("python.exe", "python${{ matrix.versions.python }}.exe") | |
| New-Item -ItemType HardLink -Path "$newPath" -Value "${{ steps.pysetup.outputs.python-path }}" | |
| - name: Display Python and Pip versions | |
| run: | | |
| python${{ matrix.versions.python }} -c "import sys; print(sys.version)" | |
| pip --version | |
| - name: Upgrade pip wheel setuptools | |
| run: python${{ matrix.versions.python }} -m pip install wheel setuptools pip --upgrade | |
| - name: Install other dependencies | |
| run: python${{ matrix.versions.python }} -m pip install Cython pytest pytest-cov flake8 | |
| - name: Install pinned dependencies - numpy ${{ matrix.versions.numpy }}, scipy ${{ matrix.versions.scipy }} | |
| run: | | |
| python${{ matrix.versions.python }} -m pip install "numpy<2.0.0" "scipy<=1.13.1" | |
| python${{ matrix.versions.python }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }} | |
| python${{ matrix.versions.python }} -m pip install -e .[tests] | |
| - name: Display numpy version | |
| run: python${{ matrix.versions.python }} -c "import numpy; print(numpy.__version__)" | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| python${{ matrix.versions.python }} -m pytest --cov=cornac |