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Fix Pytest error in test cases due to Numpy 2.0 incompatibility (#627) #713

Fix Pytest error in test cases due to Numpy 2.0 incompatibility (#627)

Fix Pytest error in test cases due to Numpy 2.0 incompatibility (#627) #713

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: master
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build:
name: Building on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [windows-latest, ubuntu-latest, macos-13, macos-14]
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
env:
LIMIT_NUMPY_VERSION: 2.0.0
LIMIT_SCIPY_VERSION: 1.13.1
steps:
- name: Get number of CPU cores
uses: SimenB/github-actions-cpu-cores@v2
id: cpu-cores
- uses: actions/checkout@v4
- name: Setup Python ${{ matrix.python-version }}
if: ${{ (matrix.os != 'macos-14') || ((matrix.os == 'macos-14') && (matrix.python-version != '3.8') && (matrix.python-version != '3.9')) }}
uses: actions/setup-python@v5
id: pysetup
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
- name: Setup Python 3.8-3.9 - macos-arm
if: ${{ (matrix.os == 'macos-14') && ((matrix.python-version == '3.8') || (matrix.python-version == '3.9')) }}
run: |
brew update
brew install python@${{ matrix.python-version }}
curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
python${{ matrix.python-version }} get-pip.py
- name: Create Python alias for Windows
if: matrix.os == 'windows-latest'
run: |
$newPath = "${{ steps.pysetup.outputs.python-path }}".Replace("python.exe", "python${{ matrix.python-version }}.exe")
New-Item -ItemType HardLink -Path "$newPath" -Value "${{ steps.pysetup.outputs.python-path }}"
- name: Display Python and Pip versions
run: |
python${{ matrix.python-version }} -c "import sys; print(sys.version)"
pip --version
- name: Upgrade pip wheel setuptools
run: python${{ matrix.python-version }} -m pip install wheel setuptools pip --upgrade
- name: Install other dependencies
run: python${{ matrix.python-version }} -m pip install Cython pytest pytest-cov flake8
- name: Install other dependencies
run: |
python${{ matrix.python-version }} -m pip install Cython pytest pytest-cov flake8 "numpy<${{ env.LIMIT_NUMPY_VERSION }}" "scipy<=${{ env.LIMIT_SCIPY_VERSION }}"
python${{ matrix.python-version }} setup.py build_ext -j${{ steps.cpu-cores.outputs.count }}
python${{ matrix.python-version }} -m pip install -e .[tests]
- name: Display numpy version
run: python${{ matrix.python-version }} -c "import numpy; print(numpy.__version__)"
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
python${{ matrix.python-version }} -m pytest --cov=cornac