delete intermediate VCF files after MAF filtering

ProGenNo · May 16, 2024 · 94a15bf · 94a15bf
1 parent 633026c
commit 94a15bf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Snakefile b/Snakefile
@@ -227,7 +227,7 @@ rule filter_phased_vcf:
     input:
         vcf=expand('{proxy}', proxy=[config['phased_local_path'] + config['phased_vcf_file_name']] if len(config["phased_local_path"]) > 0 else ["data/vcf/phased/" + config['phased_vcf_file_name']])
     output:
-        "data/vcf/phased/chr{chr}_phased_filtered.vcf"
+        temp("data/vcf/phased/chr{chr}_phased_filtered.vcf")
     params:
         AF_threshold=config['phased_min_af'],
         AF_field=config['phased_af_field']