Merge pull request #440 from Proteobench/DDA-quant-peptidoform

Show peptidoform DDA quant module

webinterface/.streamlit/pages.toml

@@ -6,6 +6,10 @@ name = "Home"
 path = "pages/DDA_Quant_ion.py"
 name = "DDA Quant Ion Level -BETA-"
 
+[[pages]]
+path = "pages/DDA_Quant_peptidoform.py"
+name = "DDA Quant Peptidoform Level -BETA-"
+
 [[pages]]
 path = "pages/DIA_Quant_ion.py"
 name = "DIA Quant Ion Level -BETA-"

webinterface/pages/DDA_Quant_peptidoform.py

@@ -8,7 +8,9 @@
 from pages.texts.generic_texts import WebpageTexts
 
 from proteobench.io.parsing.parse_settings_peptidoform import ParseSettingsBuilder
-from proteobench.modules.dda_quant_peptidoform.dda_quant_peptidoform_module import DDAQuantPeptidoformModule
+from proteobench.modules.dda_quant_peptidoform.dda_quant_peptidoform_module import (
+    DDAQuantPeptidoformModule,
+)
 
 
 class StreamlitUI:
@@ -42,14 +44,82 @@ def _main_page(self) -> None:
         Sets up the main page layout for the Streamlit application.
         This includes the title, module descriptions, input forms, and configuration settings.
         """
-        self.quant_uiobjects.create_text_header()
-        self.quant_uiobjects.create_main_submission_form()
-        self.quant_uiobjects.init_slider()
+        # Create tabs
+        (
+            tab_results_all,
+            tab_submission_details,
+            tab_indepth_plots,
+            tab_results_new,
+            tab_public_submission,
+        ) = st.tabs(
+            [
+                "Public Benchmark Runs",
+                "Submit New Data",
+                "Results In-Depth",
+                "Results New Data",
+                "Public Submission",
+            ]
+        )
+
+        with tab_results_all:
+            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.write(
+                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
+            )
+            if self.variables_dda_quant.beta_warning:
+                st.warning(
+                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
+                )
+            self.quant_uiobjects.display_all_data_results_main()
+
+        # Tab 2: Submission Details
+        with tab_submission_details:
+            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.write(
+                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
+            )
+            if self.variables_dda_quant.beta_warning:
+                st.warning(
+                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
+                )
+            self.quant_uiobjects.display_submission_form()
+
+        # Tab 2.5: in-depth plots current data
+        with tab_indepth_plots:
+            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.write(
+                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
+            )
+            if self.variables_dda_quant.beta_warning:
+                st.warning(
+                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
+                )
+            self.quant_uiobjects.generate_current_data_plots(True)
+
+        # Tab 3: Results (New Submissions)
+        with tab_results_new:
+            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.write(
+                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
+            )
+            if self.variables_dda_quant.beta_warning:
+                st.warning(
+                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
+                )
 
-        if self.quant_uiobjects.variables_quant.fig_logfc in st.session_state:
-            self.quant_uiobjects.populate_results()
+            self.quant_uiobjects.display_all_data_results_submitted()
 
-        self.quant_uiobjects.create_results()
+        # Tab 4: Public Submission
+        with tab_public_submission:
+            st.title(self.variables_dda_quant.texts.ShortMessages.title)
+            st.write(
+                f"The full description of the module is available [here]({self.variables_dda_quant.texts.ShortMessages.doc_url})"
+            )
+            if self.variables_dda_quant.beta_warning:
+                st.warning(
+                    "This module is in BETA phase. The figure presented below and the metrics calculation may change in the near future."
+                )
+            self.quant_uiobjects.display_public_submission_ui()
 
 
 if __name__ == "__main__":

webinterface/pages/pages_variables/dda_quant_peptidoform_variables.py

@@ -21,13 +21,26 @@ class VariablesDDAQuant:
     comments_submission_uuid: str = "comments_submission_uuid_dda_quant_peptidoform"
     check_submission_uuid: str = "check_submission_uuid_dda_quant_peptidoform"
     meta_data_text: str = "comments_for_submission_dda_quant_peptidoform"
-    check_submission: str = "heck_submission_dda_quant_peptidoform"
+    check_submission: str = "check_submission_dda_quant_peptidoform"
     button_submission_uuid: str = "button_submission_uuid_dda_quant_peptidoform"
     df_head: str = "df_head_dda_quant_peptidoform"
     placeholder_fig_compare: str = "placeholder_fig_compare_dda_quant_peptidoform"
+
+    all_datapoints_submitted: str = "all_datapoints_submitted_dda_quant_peptidoform"
+    placeholder_table_submitted: str = "placeholder_table_submitted_dda_quant_peptidoform"
+    placeholder_slider_submitted: str = "placeholder_slider_submitted_dda_quant_peptidoform"
+    highlight_list_submitted: List[str] = field(default_factory=list)
+    selectbox_id_submitted_uuid: str = "selectbox_id_submitted_dda_quant_peptidoform"
+    selectbox_id_uuid: str = "selectbox_id_dda_quant_peptidoform"
+    slider_id_submitted_uuid: str = "slider_id_submitted_dda_quant_peptidoform"
+    slider_id_uuid: str = "slider_id_dda_quant_peptidoform"
+    download_selector_id_uuid: str = "download_selector_id_dda_quant_peptidoform"
+    table_id_uuid: str = "table_id_dda_quant_peptidoform"
+
     placeholder_table: str = "placeholder_table_dda_quant_peptidoform"
     placeholder_slider: str = "placeholder_slider_dda_quant_peptidoform"
-    placeholder_downloads_container: str = "placeholder_downloads_container"
+
+    placeholder_downloads_container: str = "placeholder_downloads_container_dda_quant_peptidoform"
     highlight_list: List[str] = field(default_factory=list)
     first_new_plot: bool = True
     default_val_slider: int = 3