bump version to 0.4.4

Psy-Fer · Nov 25, 2021 · c6f156c · c6f156c
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commit c6f156c
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Showing 9 changed files with 19 additions and 12 deletions.
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -17,12 +17,12 @@ jobs:
     - name: package x86
       run: |
         export ARCH=x86-64 && export OS=linux
-        VERSION_OLD=0.4.2 && export LINK=https://github.com/Psy-Fer/interARTIC/releases/download/v${VERSION_OLD}/interartic-v${VERSION_OLD}-${OS}-${ARCH}-binaries.tar.gz
+        VERSION_OLD=0.4.3 && export LINK=https://github.com/Psy-Fer/interARTIC/releases/download/v${VERSION_OLD}/interartic-v${VERSION_OLD}-${OS}-${ARCH}-binaries.tar.gz
         test/update.sh
     - name: package aarch64
       run: |
         export ARCH=aarch64 && export OS=linux
-        VERSION_OLD=0.4.2 && export LINK=https://github.com/Psy-Fer/interARTIC/releases/download/v${VERSION_OLD}/interartic-v${VERSION_OLD}-${OS}-${ARCH}-binaries.tar.gz
+        VERSION_OLD=0.4.3 && export LINK=https://github.com/Psy-Fer/interARTIC/releases/download/v${VERSION_OLD}/interartic-v${VERSION_OLD}-${OS}-${ARCH}-binaries.tar.gz
         test/update.sh
     - uses: "marvinpinto/action-automatic-releases@latest"
       with:
@@ -39,7 +39,7 @@ jobs:
     - name: package x86
       run: |
         export ARCH=x86-64 && export OS=macos
-        VERSION_OLD=0.4.2 && export LINK=https://github.com/Psy-Fer/interARTIC/releases/download/v${VERSION_OLD}/interartic-v${VERSION_OLD}-${OS}-${ARCH}-binaries.tar.gz
+        VERSION_OLD=0.4.3 && export LINK=https://github.com/Psy-Fer/interARTIC/releases/download/v${VERSION_OLD}/interartic-v${VERSION_OLD}-${OS}-${ARCH}-binaries.tar.gz
         test/update.sh
     - uses: softprops/action-gh-release@v1
       if: startsWith(github.ref, 'refs/tags/')

diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -0,0 +1,7 @@
+{
+    "terminal.integrated.profiles.linux": {
+      "bash": {
+        "path": "/c/Windows/system32/bash",
+      }
+    }
+  }
diff --git a/Dockerfile b/Dockerfile
@@ -1,7 +1,7 @@
 FROM ubuntu:16.04
 WORKDIR /
 RUN apt-get update && apt-get install -y wget
-RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
+RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
 RUN tar xf interartic_bin.tar.gz
 WORKDIR /interartic_bin
 CMD ./run.sh -a 0.0.0.0
diff --git a/README.md b/README.md
@@ -25,7 +25,7 @@ Pre-compiled binary releases are provided for Linux and MacOS for easy setup. Th
   - *x86_64*: Binaries for _x86_64_ should work on any Linux distribution as long as *GLIBC 2.17* (and basic shared libraries such as *pthreads*) or higher and `/usr/bin/env` are present. We have tested on Ubuntu (versions 14, 16, 18 and 20), CentOS, Debian, Fedora, Arch Linux, Gentoo Linux and openSUSE. These binaries are also verified to work on Windows 10 through Windows Subsystem for Linux. Open a bash terminal and execute the following commands:
 
     ```bash
-    wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
+    wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
     tar xf interartic_bin.tar.gz
     cd interartic_bin
     ./run.sh
@@ -34,7 +34,7 @@ Pre-compiled binary releases are provided for Linux and MacOS for easy setup. Th
   - *aarch64*: Binaries for aarch64 should work on any Linux distribution with *GLIBC 2.23* or higher. Currently, only the nanopolish pipeline is available for _aarch64_ and we have tested on Ubuntu 16 and Ubuntu 18.04 (using Rock64, Jetson Xavier and Jetson Nano single board computers).  For aarch64, run the same commands as above except the *wget* command, that should be now replaced with:
 
     ```
-    wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-aarch64-binaries.tar.gz -O interartic_bin.tar.gz
+    wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-aarch64-binaries.tar.gz -O interartic_bin.tar.gz
 
     ```
 
@@ -44,7 +44,7 @@ Pre-compiled binary releases are provided for Linux and MacOS for easy setup. Th
   We provide a pre-compiled binary release for macOS on x86_64. Newer mac with M1 ARM chip can still run these binaries opaquely through Rosetta. Open a terminal and execute the following commands:
 
   ```bash
-  curl https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-macos-x86-64-binaries.tar.gz -o interartic_bin.tar.gz -L
+  curl https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-macos-x86-64-binaries.tar.gz -o interartic_bin.tar.gz -L
   xattr -dr com.apple.quarantine interartic_bin.tar.gz  #to prevent the macOS's gatekeeper from blocking our binaries, required if you download through a web browser, but just in case
   tar xf interartic_bin.tar.gz
   cd interartic_bin

diff --git a/main.py b/main.py
@@ -28,7 +28,7 @@
 import numpy as np
 
 
-VERSION = "0.4.3"
+VERSION = "0.4.4"
 ARTIC_VERSION = "1.2.1"
 DOCS = "/static/site/index.html"
 print(DOCS)

diff --git a/test/Dockerfile_archlinux b/test/Dockerfile_archlinux
@@ -1,7 +1,7 @@
 FROM archlinux:base-20210131.0.14634
 WORKDIR /
 RUN pacman -Syy --noconfirm && pacman -S --noconfirm wget
-RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
+RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
 RUN tar xf interartic_bin.tar.gz
 WORKDIR /interartic_bin
 CMD ./run.sh -a 0.0.0.0
diff --git a/test/Dockerfile_fedora b/test/Dockerfile_fedora
@@ -1,7 +1,7 @@
 FROM fedora:34
 WORKDIR /
 RUN dnf update -y && dnf install -y wget procps libnsl
-RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
+RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
 RUN tar xf interartic_bin.tar.gz
 WORKDIR /interartic_bin
 CMD ./run.sh -a 0.0.0.0
diff --git a/test/Dockerfile_gentoo b/test/Dockerfile_gentoo
@@ -1,6 +1,6 @@
 FROM gentoo/stage3:20210723
 WORKDIR /
-RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
+RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
 RUN tar xf interartic_bin.tar.gz
 WORKDIR /interartic_bin
 CMD ./run.sh -a 0.0.0.0
diff --git a/test/Dockerfile_opensuse b/test/Dockerfile_opensuse
@@ -1,7 +1,7 @@
 FROM opensuse/leap:15.2
 WORKDIR /
 RUN zypper install -y wget tar gzip
-RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.3/interartic-v0.4.3-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
+RUN wget https://github.com/Psy-Fer/interARTIC/releases/download/v0.4.4/interartic-v0.4.4-linux-x86-64-binaries.tar.gz -O interartic_bin.tar.gz
 RUN tar xf interartic_bin.tar.gz
 WORKDIR /interartic_bin
 CMD ./run.sh -a 0.0.0.0