Scripts for manuscript Pulmonary Ventilation Analysis Using UTE Lung MRI: A Reproducibility Study
- phase resolved recon
- main function: pr_recon_bash.sh, pr_recon.m
- antspynet segmentation
- main function: AntsSegmentation-Cyclic.py
- constrained registration
- elastix.py: Elastix 3d+t registration
- ants_syn.py: ANTs SyN registration
- stats analysis
- split_violin.py: split violin plot of ventilation
- bland_altman.py: Bland-Altman plot of total ventilation
- bland_altman_6zone.py: Bland-Altman plot of total ventilation in 6 zones
- ants_intra_subject.py: register between two scans
- coefficient_of_variation.py: coefficient of variation between two scans