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Submit command #6
Commits on Apr 25, 2024
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Incompatible version. And `click` v8 lib already has types.
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Init work on using parsl to run a series of commands
* Explicitly creating subdirs for each command step seems wrong. Is there a better way? * We think data futures (https://parsl.readthedocs.io/en/stable/userguide/futures.html#datafutures) might be the "right" thing to use for chaining commands instead of calling `result()` for each, but that requires us to know in advance what the output filename of each command id. Are there cases where a command could output multiple files?
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Merge pull request #3 from QGreenland-Net/nox-venv-reuse-doc
Flesh out Nox usage docs
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Commits on Apr 26, 2024
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Attempt to simplify code using
create_from_yaml
Unfortunately, this isn't quite what we were looking for. We actually want to `apply`, not `create`, because with `create` (the imperative method) we need to deal with cleanup of the previous object, or patch it. With `apply` (the declarative method), we specify what we want and kubernetes takes care of the rest.
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WIP refactor submit logic to own file
NOTE: Some imports still need fixing
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Commits on Apr 29, 2024
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`curl` complains when the URL doesn't contain a filename that it can use when given a directory with `-O`. `wget` can fetch the remote resource and figure out the filename when given a dir to write to with `-P`
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Update image used by parsl init & workers to v0.2.0
Latest parsl code + added `wget`
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Jinja templates: use
StrictUndefined
.Raises an error when variables are unset.
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Fix
run_cmd
invocation. Expects cmd as a kwargThis feels increasingly "wrong". By injecting values into templates representing python code, we don't gain any of the advantages of our usual tooling around types, code formatting, syntax checking, etc. We only find out about e.g., syntax errors and incorrectly formatted function calls (kwarg vs positional, as in this case) until we try to execute the program.
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Commits on Apr 30, 2024
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Use
--content-disposition
in wget commandThis uses the remote server's name for a file when it isn't available in the url path
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