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Merge pull request #475 from fedorov/master
Migrate to Github Action
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| Original file line number | Diff line number | Diff line change |
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| name: C/C++ CI Linux | ||
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| on: | ||
| push: | ||
| branches: [ "master" ] | ||
| pull_request: | ||
| branches: [ "master" ] | ||
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| permissions: | ||
| deployments: write | ||
| packages: write | ||
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| jobs: | ||
| build-linux: | ||
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| runs-on: ubuntu-latest | ||
| timeout-minutes: 40 | ||
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| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: '3.7.14' | ||
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| - name: "Install jsondiff" | ||
| run: pip install jsondiff | ||
| - name: "Install cmake" | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install rsync | ||
| sudo apt-get install cmake | ||
| - name: "Build dcmqi" | ||
| run: | | ||
| cd docker && make dcmqi | ||
| - name: "Test dcmqi" | ||
| run: | | ||
| cd docker && make dcmqi.test | ||
| - name: "Publish docker image" | ||
| run: | | ||
| docker login -u ${{ secrets.DOCKER_USER }} -p ${{ secrets.DOCKER_PASS }} && \ | ||
| docker push fedorov/dcmqi:`git describe --tags --exact-match 2> /dev/null || echo "latest"` \ | ||
| || echo "skipping docker push" | ||
| - name: "Publish linux package" | ||
| run: | | ||
| pip install -U "scikit-ci-addons>=0.22.0" | ||
| # python -m scikit-ci publish --package-name dcmqi --package-version `git | ||
| # describe --tags --exact-match 2> /dev/null || echo "latest"` --platform linux | ||
| # --commit-range ${{ github.event.pull_request.base.sha }}...${{ github.event.pull_request.head.sha }} --repository ${{ github.event.pull_request.head.repo.full_name }} --token ${{ secrets.GITHUB_TOKEN }} --verbose | ||
| ci_addons publish_github_release fedorov/dcmqi \ | ||
| --prerelease-packages "build/dcmqi-build/dcmqi-*-linux-*.tar.gz" \ | ||
| --prerelease-packages-clear-pattern "dcmqi-*-linux-*" \ | ||
| --prerelease-packages-keep-pattern "*<COMMIT_DATE>-<COMMIT_SHORT_SHA>*" \ | ||
| --exit-success-if-missing-token --token ${{ secrets.GA_TOKEN }} |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,96 @@ | ||
| name: C/C++ CI macOS | ||
|
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| # We only run this on pushes and pull requests to master branch, | ||
| # as well as on manual trigger (workflow_dispatch, useful if workflow | ||
| # has been disabled earlier). | ||
| on: | ||
| push: | ||
| branches: [ "master" ] | ||
| pull_request: | ||
| branches: [ "master" ] | ||
| workflow_dispatch: | ||
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| jobs: | ||
| build-macos: | ||
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| runs-on: macos-latest | ||
| # So far, a full superbuild (no caches) has always been complete in < 45 minutes. | ||
| timeout-minutes: 45 | ||
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| # Checkout and install python | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: '3.7.14' | ||
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| # Install build tools (cmake and ninja) as well as jsondiff | ||
| - name: "Install jsondiff" | ||
| run: pip install jsondiff | ||
| - name: "Install cmake" | ||
| run: | | ||
| cmake --version | ||
| echo ${PATH} | ||
| wget --no-check-certificate https://github.com/ninja-build/ninja/releases/download/v1.7.2/ninja-mac.zip | ||
| unzip ninja-mac.zip && sudo cp ninja /usr/local/bin/ | ||
| # Make sure all directories required for computing the hash actually exist | ||
| - name: "Prepare cache directories" | ||
| run: | | ||
| mkdir -p ${{ github.workspace }}/dcmqi-build/DCMTK-build | ||
| mkdir -p ${{ github.workspace }}/dcmqi-build/DCMTK | ||
| mkdir -p ${{ github.workspace }}/dcmqi-build/ITK | ||
| mkdir -p ${{ github.workspace }}/dcmqi-build/ITK-build | ||
| mkdir -p ${{ github.workspace }}/dcmqi-build/zlib-install | ||
| # Prepare the cache directories, which are DCMTK/ITK source and build directories | ||
| # since dcmqi build later requires DCMTK/ITK headers from source, and libraries from | ||
| # build directories. For ZLIB, installation directory is sufficient since it contains | ||
| # both, headers and libraries. | ||
| - name: Check for cached DCMTK, ITK and ZLIB | ||
| id: cache-dcmtk-itk-zlib | ||
| uses: actions/cache@v3 | ||
| env: | ||
| cache-name: cache-dcmtk-itk-zlib | ||
| with: | ||
| # The recursive content of these directories goes into the cache | ||
| path: | | ||
| ${{ github.workspace }}/dcmqi-build/DCMTK | ||
| ${{ github.workspace }}/dcmqi-build/DCMTK-build | ||
| ${{ github.workspace }}/dcmqi-build/ITK | ||
| ${{ github.workspace }}/dcmqi-build/ITK-build | ||
| ${{ github.workspace }}/dcmqi-build/zlib-install | ||
| # The hash key decides whether cache entry is out of date or can be used. | ||
| # We use the hash of the CMakeExternals files to decide whether | ||
| # we must rebuild it. Also a change in the OS will trigger cash rebuild. | ||
| # A hashkey will have the form of macOS-build-cache-dcmtk-itk-<hash> | ||
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('CMakeExternals/DCMTK.cmake','CMakeExternals/ITK.cmake', 'CMakeExternals/zlib.cmake') }} | ||
| # Below is the key pattern that defines, which cache entries stored on the | ||
| # GitHub repository will match our key. We simply use the name of OS and | ||
| # name of the cache, i.e. every cache entry with key pattern | ||
| # macOS-build-cache-dcmtk-itk-<hash> will match. | ||
| restore-keys: | | ||
| ${{ runner.os }}-build-${{ env.cache-name }}- | ||
| # This is step executed if a cache entry is found | ||
| - name: "Configure dcmqi w/ cached DCMTK/ITK/ZLIB" | ||
| if: ${{ steps.cache-dcmtk-itk-zlib.outputs.cache-hit == 'true' }} | ||
| # Make sure to set ITK, DCMTK and ZLIB directories to dcmqi cmake configuration step | ||
| run: | | ||
| cd ${{ github.workspace }}/dcmqi-build && cmake -G Ninja ${{ github.workspace }} -DDCMTK_DIR=${{ github.workspace }}/dcmqi-build/DCMTK-build -DITK_DIR=${{ github.workspace }}/dcmqi-build/ITK-build -DZLIB_ROOT=${{ github.workspace }}/dcmqi-build/zlib-install | ||
| # If we don't have a matching cache entry, configure for full rebuild (regular dcmqi superbuild) | ||
| - name: "Configure dcmqi w/o cached DCMTK/ITK/ZLIB" | ||
| if: ${{ steps.cache-dcmtk-itk-zlib.outputs.cache-hit != 'true' }} | ||
| run: | | ||
| cd ${{ github.workspace }}/dcmqi-build && cmake -G Ninja ${{ github.workspace }} | ||
| # Build dcmqi | ||
| - name: "Build dcmqi" | ||
| run: | | ||
| cd ${{ github.workspace }}/dcmqi-build && ninja | ||
| # ...and finally package it. | ||
| - name: "Package dcmqi" | ||
| run: | | ||
| cd ${{ github.workspace }}/dcmqi-build/dcmqi-build && ninja package |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,68 @@ | ||
| name: C/C++ CI Windows | ||
|
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| on: | ||
| push: | ||
| branches: [ "master" ] | ||
| pull_request: | ||
| branches: [ "master" ] | ||
| workflow_dispatch: | ||
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| jobs: | ||
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| build-windows: | ||
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| runs-on: windows-latest | ||
| timeout-minutes: 30 | ||
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| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: microsoft/setup-msbuild@v1.1 | ||
| with: | ||
| vs-version: '17' | ||
| msbuild-architecture: x64 | ||
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| - uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: '3.8.0' | ||
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| - name: Download prerequisite packages | ||
| run: | | ||
| $client = new-object System.Net.WebClient; | ||
| $client.DownloadFile("https://github.com/QIICR/dicom3tools/releases/download/20200512090031/dicom3tools_winexe_1.00.snapshot.20200512090031.zip", "c:\dicom3tools.zip") | ||
| $client.DownloadFile("https://github.com/QIICR/zlib-dcmqi/releases/download/zlib-dcmqi-1.2.3-VS17-Win64-Release-static/zlib-dcmqi.zip", "c:\zlib-dcmqi.zip") | ||
| $client.DownloadFile("https://github.com/QIICR/dcmtk-dcmqi/releases/download/DCMTK-dcmqi-3.6.7_20220105-VS12-Win64-Release-v0.0.32-static/DCMTK-dcmqi.zip", "c:\DCMTK-dcmqi.zip") | ||
| $client.DownloadFile("https://github.com/QIICR/ITK-dcmqi/releases/download/ITK-dcmqi-VS17-Win64-Release-v0.0.40-static/ITK-dcmqi.zip", "c:\ITK-dcmqi.zip") | ||
| shell: pwsh | ||
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| - name: Uncompress prerequisite packages | ||
| run: | | ||
| 7z x c:\dicom3tools.zip -oc:\dicom3tools | ||
| 7z x c:\zlib-dcmqi.zip -oc:\zlib-install | ||
| 7z x c:\DCMTK-dcmqi.zip -oc:\DCMTK-install | ||
| 7z x c:\ITK-dcmqi.zip -oc:\ITK-install | ||
| - name: Install prerequisite python packages | ||
| run: | | ||
| pip install jsondiff | ||
| - name: Configure project | ||
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| run: | | ||
| ls ${{ github.workspace }} | ||
| echo "WORKSPACE dir: ${{ github.workspace }}" | ||
| cmake --version | ||
| mkdir ${{ github.workspace }}\dcmqi-build | ||
| echo "Step 2" | ||
| cd ${{ github.workspace }}\dcmqi-build | ||
| echo "Step 3" | ||
| cmake -G "Visual Studio 17 2022" -Ax64 -DITK_DIR:PATH=c:\ITK-install\lib\cmake\ITK-5.3 -DDCMTK_DIR:PATH=c:\DCMTK-install\cmake -DZLIB_ROOT:PATH=c:\zlib-install -DZLIB_INCLUDE_DIR:PATH=c:\zlib-install\include -DZLIB_LIBRARY:FILEPATH=c:\zlib-install\lib\zlib.lib -DBUILD_SHARED_LIBS:BOOL=OFF ${{ github.workspace }} | ||
| - name: Build dcmqi and package | ||
| run: | | ||
| cd ${{ github.workspace }}\dcmqi-build/ | ||
| cmake --build . --config Release -- /m | ||
| cd ${{ github.workspace }}\dcmqi-build\dcmqi-build | ||
| cmake --build . --config Release --target PACKAGE -- /m | ||
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