Skip to content

Commit

Permalink
MMP components and stoichiometry
Browse files Browse the repository at this point in the history
  • Loading branch information
joyxyz1994 committed Oct 10, 2023
1 parent f226608 commit 4847f2f
Show file tree
Hide file tree
Showing 2 changed files with 188 additions and 85 deletions.
84 changes: 47 additions & 37 deletions qsdsan/data/process_data/_madm1.tsv
Original file line number Diff line number Diff line change
@@ -1,37 +1,47 @@
S_su S_aa S_fa S_va S_bu S_pro S_ac S_h2 S_ch4 S_IC S_IN S_IP S_I X_ch X_pr X_li X_su X_aa X_fa X_c4 X_pro X_ac X_h2 X_I X_PHA X_PP X_PAO S_K S_Mg S_SO4 S_IS X_hSRB X_aSRB X_pSRB X_c4SRB S_S0 S_Fe3 S_Fe2
hydrolysis_carbs 1 ? ? ? -1
hydrolysis_proteins 1 ? ? ? -1
hydrolysis_lipids 1-f_fa_li f_fa_li ? ? ? -1
uptake_sugars -1 (1-Y_su)*f_bu_su (1-Y_su)*f_pro_su (1-Y_su)*f_ac_su (1-Y_su)*f_h2_su ? ? ? Y_su
uptake_amino_acids -1 (1-Y_aa)*f_va_aa (1-Y_aa)*f_bu_aa (1-Y_aa)*f_pro_aa (1-Y_aa)*f_ac_aa (1-Y_aa)*f_h2_aa ? ? ? Y_aa
uptake_LCFA -1 (1-Y_fa)*f_ac_fa (1-Y_fa)*f_h2_fa ? ? ? Y_fa
uptake_valerate -1 (1-Y_c4)*f_pro_va (1-Y_c4)*f_ac_va (1-Y_c4)*f_h2_va ? ? ? Y_c4
uptake_butyrate -1 (1-Y_c4)*f_ac_bu (1-Y_c4)*f_h2_bu ? ? ? Y_c4
uptake_propionate -1 (1-Y_pro)*f_ac_pro (1-Y_pro)*f_h2_pro ? ? ? Y_pro
uptake_acetate -1 1-Y_ac ? ? ? Y_ac
uptake_h2 -1 1-Y_h2 ? ? ? Y_h2
decay_Xsu ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xaa ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xfa ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xc4 ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xpro ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xac ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xh2 ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
storage_PHA_valerate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
storage_PHA_butyrate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
storage_PHA_propionate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
storage_PHA_actate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
lysis_XPAO ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
lysis_XPP ? ? ? -1 K_XPP Mg_XPP
lysis_XPHA f_va_pha f_bu_pha f_pro_pha f_ac_pha ? ? ? -1
growth_SRB_h2 -1 ? ? ? -1*(1-Y_hSRB)*i_mass_IS*(MW_S0/MW_IS) 1-Y_hSRB Y_hSRB
decay_XhSRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
growth_SRB_acetate -1 ? ? ? -1*(1-Y_aSRB)*i_mass_IS*(MW_S0/MW_IS) 1-Y_aSRB Y_aSRB
decay_XaSRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
growth_SRB_propionate -1 (1-Y_pSRB)*f_ac_pro ? ? ? -1*(1-Y_pSRB)*f_is_pro*i_mass_IS*(MW_S0/MW_IS) (1-Y_pSRB)*f_is_pro Y_pSRB
decay_XpSRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
growth_SRB_butyrate -1 (1-Y_c4SRB)*f_ac_bu ? ? ? -1*(1-Y_c4SRB)*f_is_bu*i_mass_IS*(MW_S0/MW_IS) (1-Y_c4SRB)*f_is_bu Y_c4SRB
growth_SRB_valerate -1 (1-Y_c4SRB)*f_pro_va (1-Y_c4SRB)*f_ac_va ? ? ? -1*(1-Y_c4SRB)*f_is_va*i_mass_IS*(MW_S0/MW_IS) (1-Y_c4SRB)*f_is_va Y_c4SRB
decay_Xc4SRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
Fe3_reduction_h2 -1 -1*i_mass_Fe2 1
Fe3_reduction_IS -1 (MW_S0/i_mass_S0)/(MW_IS/i_mass_IS) i_mass_Fe2*((MW_S0/i_mass_S0)/(MW_IS/i_mass_IS)-1) 1-(MW_S0/i_mass_S0)/(MW_IS/i_mass_IS)
S_su S_aa S_fa S_va S_bu S_pro S_ac S_h2 S_ch4 S_IC S_IN S_IP S_I X_ch X_pr X_li X_su X_aa X_fa X_c4 X_pro X_ac X_h2 X_I X_PHA X_PP X_PAO S_K S_Mg S_SO4 S_IS X_hSRB X_aSRB X_pSRB X_c4SRB S_S0 S_Fe3 S_Fe2 X_HFO_H X_HFO_L X_HFO_old X_HFO_HP X_HFO_LP X_HFO_HP_old X_HFO_LP_old
hydrolysis_carbs 1 ? ? ? -1
hydrolysis_proteins 1 ? ? ? -1
hydrolysis_lipids 1-f_fa_li f_fa_li ? ? ? -1
uptake_sugars -1 (1-Y_su)*f_bu_su (1-Y_su)*f_pro_su (1-Y_su)*f_ac_su (1-Y_su)*f_h2_su ? ? ? Y_su
uptake_amino_acids -1 (1-Y_aa)*f_va_aa (1-Y_aa)*f_bu_aa (1-Y_aa)*f_pro_aa (1-Y_aa)*f_ac_aa (1-Y_aa)*f_h2_aa ? ? ? Y_aa
uptake_LCFA -1 (1-Y_fa)*f_ac_fa (1-Y_fa)*f_h2_fa ? ? ? Y_fa
uptake_valerate -1 (1-Y_c4)*f_pro_va (1-Y_c4)*f_ac_va (1-Y_c4)*f_h2_va ? ? ? Y_c4
uptake_butyrate -1 (1-Y_c4)*f_ac_bu (1-Y_c4)*f_h2_bu ? ? ? Y_c4
uptake_propionate -1 (1-Y_pro)*f_ac_pro (1-Y_pro)*f_h2_pro ? ? ? Y_pro
uptake_acetate -1 1-Y_ac ? ? ? Y_ac
uptake_h2 -1 1-Y_h2 ? ? ? Y_h2
decay_Xsu ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xaa ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xfa ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xc4 ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xpro ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xac ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
decay_Xh2 ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb -1 f_xI_xb
storage_PHA_valerate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
storage_PHA_butyrate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
storage_PHA_propionate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
storage_PHA_actate -1 ? ? ? 1 -Y_PO4 Y_PO4*K_XPP Y_PO4*Mg_XPP
lysis_XPAO ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
lysis_XPP ? ? ? -1 K_XPP Mg_XPP
lysis_XPHA f_va_pha f_bu_pha f_pro_pha f_ac_pha ? ? ? -1
growth_SRB_h2 -1 ? ? ? -1*(1-Y_hSRB)*i_mass_IS*(MW_S0/MW_IS) 1-Y_hSRB Y_hSRB
decay_XhSRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
growth_SRB_acetate -1 ? ? ? -1*(1-Y_aSRB)*i_mass_IS*(MW_S0/MW_IS) 1-Y_aSRB Y_aSRB
decay_XaSRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
growth_SRB_propionate -1 (1-Y_pSRB)*f_ac_pro ? ? ? -1*(1-Y_pSRB)*f_is_pro*i_mass_IS*(MW_S0/MW_IS) (1-Y_pSRB)*f_is_pro Y_pSRB
decay_XpSRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
growth_SRB_butyrate -1 (1-Y_c4SRB)*f_ac_bu ? ? ? -1*(1-Y_c4SRB)*f_is_bu*i_mass_IS*(MW_S0/MW_IS) (1-Y_c4SRB)*f_is_bu Y_c4SRB
growth_SRB_valerate -1 (1-Y_c4SRB)*f_pro_va (1-Y_c4SRB)*f_ac_va ? ? ? -1*(1-Y_c4SRB)*f_is_va*i_mass_IS*(MW_S0/MW_IS) (1-Y_c4SRB)*f_is_va Y_c4SRB
decay_Xc4SRB ? ? ? f_sI_xb f_ch_xb f_pr_xb f_li_xb f_xI_xb -1
reduction_HFO_H_h2 -1 1 -1*i_mass_Fe2
reduction_HFO_L_h2 -1 1 -1*i_mass_Fe2
reduction_HFO_H_IS -1 (MW_S0/i_mass_S0)/(MW_IS/i_mass_IS) 1-(MW_S0/i_mass_S0)/(MW_IS/i_mass_IS) i_mass_Fe2*((MW_S0/i_mass_S0)/(MW_IS/i_mass_IS)-1)
reduction_HFO_L_IS -1 (MW_S0/i_mass_S0)/(MW_IS/i_mass_IS) 1-(MW_S0/i_mass_S0)/(MW_IS/i_mass_IS) i_mass_Fe2*((MW_S0/i_mass_S0)/(MW_IS/i_mass_IS)-1)
aging_HFO_H -1 1
aging_HFO_L -1 1
fast_P_binding ? -1 1
slow_P_sorption ? -1 1
aging_HFO_HP -1 1
aging_HFO_LP -1 1
dissolution_HFO_HP ? 1 -1
dissolution_HFO_LP ? 1 -1
Loading

0 comments on commit 4847f2f

Please sign in to comment.