first commit

.Rbuildignore

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+^pacta\.data\.preparation\.Rproj$
+^\.Rproj\.user$
+^data-raw$
+^LICENSE\.md$
+^\.DS_Store$
+^\.github$
+^README\.Rmd$
+^doc$
+^Meta$
+^_pkgdown\.yml$

.github/.gitignore

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+*.html

.github/CODEOWNERS

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+# These owners will be the default owners for everything in
+# the repo. Unless a later match takes precedence,
+# @cjyetman will be requested for review when someone opens 
+# a pull request.
+*       @cjyetman

.github/dependabot.yml

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+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/R-CMD-check.yaml

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+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  schedule:
+    - cron: '0 5 * * 1'
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+    timeout-minutes: 25
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-latest,  r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          error-on: '"note"'

.github/workflows/add-issues-to-ADO.yml

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+---
+# This example file will enable actions that trigger on created or modified GitHub issues. 
+#
+# Note the @main in `uses:` on the last line. This will call the latest version of the workflow from the `main` branch in the RMI-PACTA/actions repo.
+# You can also specify a tag from that repo, or a commit SHA to pin action versions.
+on:
+  issues:
+    types:
+      [opened, edited, deleted, closed, reopened, labeled, unlabeled, assigned]
+    issue_comment:
+      types: [created, edited, deleted]
+
+name: GH issues
+
+permissions:
+  issues: write
+  pull-requests: write
+
+jobs:
+  issues:
+    name: Run issues workflows
+    uses: RMI-PACTA/actions/.github/workflows/issues.yml@main
+    with:
+      ado_area_path: "2DegreesInvesting\\Repositories that cjyetman maintains"
+    secrets:
+      ADO_TOKEN: ${{ secrets.ADO_PERSONAL_ACCESS_TOKEN }}

.github/workflows/add-prs-and-issues-to-project.yml

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+name: Adds all new issues and PRs to the Transition Monitor project
+
+on:
+  issues:
+    types:
+      - opened
+      - transferred
+  pull_request:
+    branches: [main]
+    types:
+      - opened
+
+jobs:
+  add-to-tm-project:
+    name: Add issue/PR to Transition Monitor project
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/add-to-project@v1.0.1
+        with:
+          project-url: https://github.com/orgs/RMI-PACTA/projects/8
+          github-token: ${{ secrets.PAT_ADD_ISSUES_TO_PROJECT }}
+
+  add-to-maintainer-project:
+    name: Add issue/PR to @cjyetman's maintainer project
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/add-to-project@v1.0.1
+        with:
+          project-url: https://github.com/orgs/RMI-PACTA/projects/13
+          github-token: ${{ secrets.PAT_ADD_ISSUES_TO_PROJECT }}

.github/workflows/pkgdown.yaml

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+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.github/workflows/pr-check-file-encodings.yml

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+name: check file encodings in PR
+on: [pull_request]
+jobs:
+  file-encoding:
+    name: file encoding check
+    runs-on: ubuntu-latest
+    timeout-minutes: 5
+
+    steps:
+      - name: run the checkout action
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: list all changed files
+        run: |
+          files=$(git diff --name-only origin/$GITHUB_BASE_REF...${{ github.sha }})
+          IFS=$'\n'; files=($files); unset IFS;  # split the string into an array
+          file --mime "${files[@]}"
+      - name: list all changed files with the wrong encoding
+        run: |
+          files=$(git diff --name-only origin/$GITHUB_BASE_REF...${{ github.sha }})
+          IFS=$'\n'; files=($files); unset IFS;  # split the string into an array
+          ! file --mime "${files[@]}" | grep -v "charset=utf-8\|charset=us-ascii\|charset=binary\| (No such file or directory)$"

.gitignore

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+### R ###
+# History files
+.Rhistory
+.Rapp.history
+
+# Session Data files
+.RData
+.RDataTmp
+
+# User-specific files
+.Ruserdata
+
+# Example code in package build process
+*-Ex.R
+
+# Output files from R CMD build
+/*.tar.gz
+
+# Output files from R CMD check
+/*.Rcheck/
+
+# RStudio files
+.Rproj.user/
+
+# produced vignettes
+vignettes/*.html
+vignettes/*.pdf
+
+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
+.httr-oauth
+
+# knitr and R markdown default cache directories
+*_cache/
+/cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+
+# R Environment Variables
+.Renviron
+
+# pkgdown site
+docs/
+
+# translation temp files
+po/*~
+
+# RStudio Connect folder
+rsconnect/
+
+### R.Bookdown Stack ###
+# R package: bookdown caching files
+/*_files/
+
+# End of https://www.toptal.com/developers/gitignore/api/r
+
+# macOS
+.DS_Store
+
+# stuff added automatically for vignette knitting
+inst/doc
+/doc/
+/Meta/

DESCRIPTION

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+Package: pacta.data.preparation
+Title: Prepare Data for PACTA for Investors
+Version: 0.1.0.9003
+Authors@R: 
+    c(person(given = "CJ",
+             family = "Yetman",
+             role = c("aut", "cre", "ctr"),
+             email = "cj@cjyetman.com",
+             comment = c(ORCID = "0000-0001-5099-9500")),
+      person(given = "Jackson", 
+             family = "Hoffart",
+             email = "jackson.hoffart@gmail.com", 
+             role = c("aut", "ctr"),
+             comment = c(ORCID = "0000-0002-8600-5042")),
+      person(given = "Jacob",
+             family = "Kastl",
+             role = c("aut", "ctr"),
+             email = "jacob.kastl@gmail.com"),
+      person(given = "Alex",
+             family = "Axthelm",
+             role = c("aut", "ctr"),
+             email = "aaxthelm@rmi.org",
+             comment = c(ORCID = "0000-0001-8579-8565")),
+      person(given = "RMI",
+             role = c("cph", "fnd"),
+             email = "PACTA4investors@rmi.org"))
+Description: This package provides tools to prepare input datasets to be run in 
+    the PACTA_analysis tool. 
+License: MIT + file LICENSE
+Encoding: UTF-8
+Language: en-US
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.3.1
+Imports: 
+    cli (>= 3.5.0),
+    countrycode,
+    data.table,
+    devtools,
+    dplyr (>= 1.1.0),
+    dtplyr,
+    jsonlite,
+    lubridate,
+    rlang,
+    stats,
+    stringr,
+    tidyr,
+    tidyselect (>= 1.2.0),
+    withr
+Depends: 
+    R (>= 3.4.0)
+LazyData: true
+Suggests: 
+    here,
+    knitr,
+    pkgdown,
+    readr,
+    readxl,
+    rmarkdown,
+    rstudioapi,
+    testthat (>= 3.0.0)
+Config/testthat/edition: 3
+Config/Needs/website: rmi-pacta/pacta.pkgdown.rmitemplate
+URL: https://github.com/RMI-PACTA/pacta.data.preparation
+BugReports: https://github.com/RMI-PACTA/pacta.data.preparation/issues
+VignetteBuilder: knitr

LICENSE

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+YEAR: 2022
+COPYRIGHT HOLDER: pacta.data.preparation authors

LICENSE.md

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+# MIT License
+
+Copyright (c) 2022 pacta.data.preparation authors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.