Merge pull request #374 from RichieHakim/dependabot/pip/dev/matplotli… #1111
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| # branches: [ "main" ] | |
| branches: [ "dev" ] | |
| # branches: [ "main", "dev" ] | |
| pull_request: | |
| # branches: [ "main" ] | |
| # branches: [ "dev" ] | |
| branches: [ "main", "dev" ] | |
| workflow_dispatch: | |
| inputs: | |
| name: | |
| description: 'description' | |
| required: false | |
| default: '' | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| name: ${{ matrix.platform }}, py${{ matrix.python-version }}, ${{ matrix.extra }}, ${{ matrix.install-level }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ | |
| # ubuntu-latest, | |
| ubuntu-24.04, | |
| ubuntu-22.04, | |
| ubuntu-20.04, | |
| # # windows-latest, | |
| windows-2022, | |
| windows-2019, | |
| # # macos-latest, | |
| macos-14, | |
| # macos-13, | |
| # macos-12, | |
| # macos-11.0, | |
| # macos-10.15, | |
| ] | |
| python-version: [ | |
| # "3.8", | |
| # "3.9", | |
| "3.10", | |
| "3.11", | |
| "3.12", | |
| ] | |
| extra: [ | |
| all, | |
| all_latest, | |
| ] | |
| install-level: [ | |
| system, | |
| # user, | |
| ] | |
| steps: | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: latest | |
| activate-environment: ROICaT | |
| auto-activate-base: true | |
| auto-update-conda: false | |
| remove-profiles: true | |
| architecture: x64 | |
| clean-patched-environment-file: true | |
| run-post: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Prepare PowerShell | |
| shell: pwsh | |
| run: | | |
| conda info | |
| conda list | |
| - name: Check specs of the machine -- Linux | |
| if: startsWith(matrix.platform, 'ubuntu') | |
| run: | | |
| ## check cpu, memory, disk, etc. | |
| ## print the command inputs to the workflow | |
| echo "CPU info (lscpu):" | |
| lscpu | |
| echo "Memory info (free -h):" | |
| free -h | |
| echo "Disk info (df -h):" | |
| df -h | |
| echo "Network info (ip a):" | |
| ip a | |
| echo "OS info (uname -a):" | |
| uname -a | |
| - name: Check specs of the machine -- Windows | |
| if: startsWith(matrix.platform, 'windows') | |
| run: | | |
| ## check cpu, memory, disk, etc. | |
| ## just do a generic check on system info | |
| ## print the command inputs to the workflow | |
| echo "System info (systeminfo):" | |
| systeminfo | |
| - name: Check specs of the machine -- MacOS | |
| if: startsWith(matrix.platform, 'macos') | |
| run: | | |
| ## check cpu, memory, disk, etc. | |
| ## print the command inputs to the workflow | |
| echo "CPU info (sysctl -n machdep.cpu.brand_string):" | |
| sysctl -n machdep.cpu.brand_string | |
| echo "Memory info (sysctl -n hw.memsize):" | |
| sysctl -n hw.memsize | |
| echo "Disk info (df -h):" | |
| df -h | |
| echo "OS info (uname -a):" | |
| uname -a | |
| - name: Install repo with pip dependencies -- system-level | |
| if: matrix.install-level == 'system' | |
| run: | | |
| ## install dependencies with optional extras | |
| pip install -v -e .[${{ matrix.extra }}] | |
| - name: Install repo with pip dependencies -- user-level | |
| if: matrix.install-level == 'user' | |
| run: | | |
| pip install -v -e .[${{ matrix.extra }}] --user | |
| - name: Check installed packages | |
| run: | | |
| pip list | |
| ## Below, check which versions of torch and torchvision are installed; and whether CUDA is available | |
| python -c "import torch, torchvision; print(f'Using versions: torch=={torch.__version__}, torchvision=={torchvision.__version__}'); print('torch.cuda.is_available() = ', torch.cuda.is_available())" | |
| - name: Run pytest and generate coverage report | |
| run: | | |
| # pip install tox tox-gh-actions | |
| pip install pytest pytest-cov | |
| # python -m pytest -v -rP --capture=tee-sys --cov=roicat --cov-report=xml:coverage.xml --color=yes | |
| python -m pytest -v -rP --capture=tee-sys --cov=roicat --cov-report=xml:coverage.xml --color=yes | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 ## this is a public action recognized by GitHub Actions | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} ## this is a secret variable | |
| file: coverage.xml ## this is the default name of the coverage report file | |
| fail_ci_if_error: false | |
| verbose: true |