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Merge pull request #342 from RichieHakim/dev
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fix readme
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RichieHakim authored Oct 25, 2024
2 parents 72fee2c + 1afebf7 commit 0b982dc
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Expand Up @@ -51,19 +51,15 @@ With ROICaT, you can:
### TRACKING:
- [Online App](https://huggingface.co/spaces/richiehakim/ROICaT_tracking): Good for first time users. Try it out without installing anything.
- [Interactive
notebook](https://github.com/RichieHakim/ROICaT/blob/main/notebooks/tracking/1_tracking_interactive_notebook.ipynb). Or run on google colab: <a target="_blank" href="https://githubtocolab.com/RichieHakim/ROICaT/blob/main/notebooks/tracking/1_tracking_interactive_notebook.ipynb">
<img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/>
</a>
notebook](https://github.com/RichieHakim/ROICaT/blob/main/notebooks/tracking/1_tracking_interactive_notebook.ipynb). Or run on google colab: <a target="_blank" href="https://githubtocolab.com/RichieHakim/ROICaT/blob/main/notebooks/tracking/1_tracking_interactive_notebook.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>
- [Command line interface script](https://github.com/RichieHakim/ROICaT/blob/main/scripts/run_tracking.sh):
```shell
roicat --pipeline tracking --path_params /path/to/params.yaml --dir_data /folder/with/data/ --dir_save /folder/save/ --prefix_name_save expName --verbose
```

### CLASSIFICATION:
- [Interactive notebook -
Drawing](https://github.com/RichieHakim/ROICaT/blob/main/notebooks/classification/A1_classify_by_drawingSelection.ipynb). Or run on google colab: <a target="_blank" href="https://githubtocolab.com/RichieHakim/ROICaT/blob/main/notebooks/classification/A1_classify_by_drawingSelection.ipynb">
<img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/>
</a>
Drawing](https://github.com/RichieHakim/ROICaT/blob/main/notebooks/classification/A1_classify_by_drawingSelection.ipynb). Or run on google colab: <a target="_blank" href="https://githubtocolab.com/RichieHakim/ROICaT/blob/main/notebooks/classification/A1_classify_by_drawingSelection.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>
- [Interactive notebook -
Labeling](https://github.com/RichieHakim/ROICaT/blob/main/notebooks/classification/B1_labeling_interactive.ipynb)
- [Interactive notebook - Train
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