iMOKA v1.1

iMOKA core:

• Reduction now stores also groups k-mer count means that will be used to generate more accurate sequences
• Improved redundancy reduction in the aggregation step for sequences in unannotated regions.
• Added annotation for repetitve elements
• Identification of stable k-mers for independent normalization
• Improved the reduction step to handle samples with different depths
• Removed Correlation filter in the aggregation to reduce the memory impact
• Added the logarithmic transformation

iMOKA GUI:

• Updated IGV, electron and moved from electron-packager to electron-forge for the distributable packages
• Load local tracks ( bam, annotation, etc.. ) on IGV
• Added the logarithmic transformation

iMOKA

First iMOKA release

• iMOKA is the singularity image containing the core software
• iMOKA_extended contains also the hg38 reference blat database and GENCODE v29 ( without introns ) used in the "default" mapper
• iMOKA-[arch].zip files contain the GUI for different architectures.

The most used are iMOKA-linux-x64 for Linux users, iMOKA-win32-x64 for Windows users and iMOKA-darwin-x64 for Mac users.
To open the GUI, just extract the folder and the executable file iMOKA ( iMOKA.exe for windows).
For mac users, the executable is in the folder iMOKA.app/Contents/MacOS/