Robaina/issue71 #166
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - '**.md' | |
| - '**.ipynb' | |
| - '**.bib' | |
| - 'ms/*' | |
| pull_request: | |
| types: [opened, reopened, edited] | |
| paths-ignore: | |
| - '**.md' | |
| - '**.ipynb' | |
| - '**.bib' | |
| - 'ms/*' | |
| jobs: | |
| create-env: | |
| name: ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: create environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.8 | |
| # mamba-version: "*" | |
| channels: conda-forge,bioconda,defaults | |
| auto-activate-base: false | |
| activate-environment: tests_pynteny | |
| environment-file: envs/pynteny-dev.yml | |
| - name: Build & Install Pynteny | |
| run: poetry build && pip install dist/pynteny*.whl | |
| - name: Run tests and collect coverage | |
| run: pynteny --help && coverage run --omit pynteny/wrappers.py,pynteny/cli.py,pynteny/subcommands.py,pynteny/utils.py -m unittest discover tests && coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| version: "v0.1.15" |