Releases: Robaina/Pynteny
Releases · Robaina/Pynteny
v1.1.2
v1.1.0
What's Changed
- test bioconda build on macos and ubuntu by @Robaina in #86
- include processes parameter in pynteny build by @Robaina in #87
- 80 report of pynteny build running out of memory in a very large database by @Robaina in #88
- changed processes command by @Robaina in #90
Full Changelog: v1.0.0...v1.1.0
Contributors
Robaina
Assets 2
v1.0.0
This is a release post-review after submitting the package at PyOpenSci. Additionally, the streamlit app has been removed (subcommand pynteny app) as it will be released later on in a different, pip-installable package (as an addon too pynteny). This changed has two motivations: 1) facilitate solving dependencies by conda and 2) streamline pynteny's code base.
What's Changed
- python >= 3.8 by @Robaina in #36
- PyOpenSci REVIEW - Refactor code to meet PEP8 by @Robaina in #40
- PyOpenSci REVIEW - extract nested functions in LabelledFASTA by @Robaina in #47
- PyOpenSci REVIEW - minor updates by @Robaina in #43
- PyOpenSci REVIEW - extract static classes and transfer to own modules by @Robaina in #45
- PyOpenSci REVIEW - add setup to docs, add building docs to contributing by @Robaina in #50
- change structure to adopt /src layout by @Robaina in #54
- PyOpenSci REVIEW - config and download default directories by @Robaina in #51
- PyOpenSci REVIEW - remove default location for PGAP download by @Robaina in #57
- added config to install dir by @Robaina in #58
- PyOpenSci REVIEW - 59 some more minor changes by @Robaina in #60
- Chore/add qoc config by @Batalex in #62
- Ensure file inputs are of type Path by @Robaina in #63
- 29 deal with genome id when building peptide database by @Robaina in #64
- add file name to files in fasta dir by @Robaina in #68
- 69 download pfam database and split models into separate files by @Robaina in #70
- update docs by @Robaina in #72
- Adjacent repeated genes by @Robaina in #73
- 74 optional prepend file name when multiple input files by @Robaina in #75
- 77 Remove Streamlit App by @Robaina in #81
- Requests + tqdm instead of python-wget by @Robaina in #84
New Contributors
Full Changelog: v0.0.5...v1.0.0
