ODElib is a python module aimed at expediting the analysis of biological systems with ODE models. This is accomplished by creating a model framework object that automatically creates many of the datastructures needed to evaluate model performance after integration. ODElib is well suited for both theoretical explorations of ODEs and testing model fits given experimental data. Using Markov chain Monte Carlo, ODElib can generate posterior distributions of parameters given some parameter priors. By generating posterior distributions given experimental data, biologists can become more precise in describing their experimental system.
Python >=3.7 is required to run ODElib
ODElib can be installed by cloning the repo and installing:
cd /dir/you/want
git clone https://github.com/SEpapoulis/ODElib.git
cd ODElib/
pip install .
Or you can directly install with pip:
pip install git+https://github.com/SEpapoulis/ODElib#egg=ODElib
pip uninstall ODElib
ODElib is in beta, please submit any issues to github!
work in progress