[IBCDPE-806] Adding Verena and Gaia to dynamics-challenge-project #358
Workflow file for this run
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| name: main | |
| on: | |
| pull_request: | |
| branches: [ '*' ] | |
| push: | |
| paths-ignore: | |
| - '**.md' | |
| jobs: | |
| validate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up python and cache | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pipenv' | |
| - name: Install pipenv | |
| run: curl https://raw.githubusercontent.com/pypa/pipenv/master/get-pipenv.py | python | |
| - name: Install dependencies | |
| run: pipenv install --dev | |
| - name: Run pre-commit linters | |
| uses: pre-commit/action@v3.0.0 | |
| # verify jinja templates | |
| - name: Install jinja libraries | |
| run: | | |
| python -m pip install --upgrade jinja2==3.0.1 | |
| - name: Install jinja linter tool | |
| run: git clone --single-branch https://github.com/drm/jinja2-lint.git /tmp/jinja2-lint && pushd /tmp/jinja2-lint && git checkout 75dcd5a | |
| - name: Lint jinja templates | |
| run: find . -type f -name "*.j2" -exec /tmp/jinja2-lint/j2lint.py '{}' + | |
| deploy-dev: | |
| if: github.ref == 'refs/heads/dev' | |
| needs: | |
| - validate | |
| uses: "./.github/workflows/rw-deploy.yaml" | |
| secrets: inherit | |
| with: | |
| job-environment: "workflows-nextflow-dev" | |
| sceptre-suffix: "dev" | |
| tower-url: "https://tower-dev.sagebionetworks.org" | |
| aws-role-to-assume: "arn:aws:iam::035458030717:role/sagebase-github-oidc-workflows-dev-nextflow-infra" | |
| aws-assume-role-duration: 7200 | |
| deploy-prod: | |
| if: github.ref == 'refs/heads/prod' | |
| needs: | |
| - validate | |
| uses: "./.github/workflows/rw-deploy.yaml" | |
| secrets: inherit | |
| with: | |
| job-environment: "workflows-nextflow-prod" | |
| sceptre-suffix: "prod" | |
| tower-url: "https://tower.sagebionetworks.org" | |
| aws-role-to-assume: "arn:aws:iam::728882028485:role/sagebase-github-oidc-workflows-prod-nextflow-infra" | |
| aws-assume-role-duration: 7200 | |
| deploy-ampad: | |
| if: github.ref == 'refs/heads/prod' | |
| needs: deploy-prod | |
| uses: "./.github/workflows/rw-deploy.yaml" | |
| secrets: inherit | |
| with: | |
| job-environment: "org-sagebase-strides-ampad-workflows" | |
| sceptre-suffix: "ampad" | |
| tower-url: "https://tower.sagebionetworks.org" | |
| aws-role-to-assume: "arn:aws:iam::751556145034:role/github-oidc-nextflow-infra" |