Fix macOS wheel build for datajoint (Issue #249)
#138
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| # Builds the aeon environment; lints formatting and smells via ruff; checks type annotations via pyright; | |
| # tests via pytest; reports test coverage via pytest-cov and codecov. | |
| name: build_env_run_tests | |
| on: | |
| pull_request: | |
| branches: [main] | |
| types: [opened, reopened, synchronize] | |
| workflow_dispatch: # allows running manually from Github's 'Actions' tab | |
| jobs: | |
| build_env_pip_pyproject: # checks only for building env using pip and pyproject.toml | |
| name: Build env using pip and pyproject.toml | |
| runs-on: ${{ matrix.os }} | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: [3.11] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: ${{ matrix.os == 'windows-latest' && 'cmd' || 'bash' }} -l {0} # Adjust shell based on OS | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Create venv and install dependencies | |
| run: | | |
| python -m venv .venv | |
| if [ ${{ matrix.os }} = 'windows-latest' ]; then | |
| .venv\Scripts\activate | |
| else | |
| source .venv/bin/activate | |
| fi | |
| pip install -e .[dev] | |
| pip list | |
| .venv/bin/python -c "import aeon" | |
| build_env_run_tests: # checks for building env using mamba and runs codebase checks and tests | |
| name: Build env and run tests on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: [3.11] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: ${{ matrix.os == 'windows-latest' && 'cmd' || 'bash' }} -l {0} | |
| steps: | |
| - name: checkout repo | |
| uses: actions/checkout@v2 | |
| - name: set up conda env (Linux, Windows) | |
| if: ${{ matrix.os != 'macos-latest' }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ./env_config/env.yml | |
| activate-environment: aeon | |
| - name: set up conda env for macOS | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ./env_config/env.yml | |
| activate-environment: aeon | |
| architecture: arm64 | |
| miniconda-version: "latest" | |
| run: | | |
| pip install datajoint | |
| - name: Update conda env with dev reqs | |
| run: mamba env update -f ./env_config/env_dev.yml | |
| # Only run codebase checks and tests for ubuntu. | |
| - name: ruff | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: python -m ruff check --config ./pyproject.toml . | |
| - name: pyright | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: python -m pyright --level error --project ./pyproject.toml . | |
| - name: pytest | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: python -m pytest tests/ | |
| - name: generate test coverage report | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| python -m pytest --cov=aeon ./tests/ --cov-report=xml:./tests/test_coverage/test_coverage_report.xml | |
| - name: upload test coverage report to codecov | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: ./tests/test_coverage/ | |
| files: test_coverage_report.xml | |
| fail_ci_if_error: true | |
| verbose: true |