fix: remove deprecated APIs

SciML · Oct 21, 2024 · 280b8d4 · 280b8d4
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diff --git a/docs/src/basics/sparsity_detection.md b/docs/src/basics/sparsity_detection.md
@@ -76,22 +76,3 @@ prob = NonlinearProblem(
 
 Refer to the documentation of DifferentiationInterface.jl and SparseConnectivityTracer.jl
 for more information on sparsity detection algorithms.
-
-## Case III: Sparse AD Type is being Used
-
-!!! warning
-
-    This is now deprecated. Please use the previous two cases instead.
-
-If you constructed a Nonlinear Solver with a sparse AD type, for example
-
-```julia
-NewtonRaphson(; autodiff = AutoSparse(AutoForwardDiff()))
-# OR
-TrustRegion(; autodiff = AutoSparse(AutoZygote()))
-```
-
-then NonlinearSolve will automatically perform matrix coloring and use sparse
-differentiation if none of `sparsity` or `jac_prototype` is provided. We default to using
-`TracerSparsityDetector()`. `Case I/II` take precedence for sparsity detection and we
-perform sparse AD based on those options if those are provided.
diff --git a/docs/src/basics/termination_condition.md b/docs/src/basics/termination_condition.md
@@ -54,18 +54,3 @@ not used as a default anywhere.
 ```@docs
 SimpleNonlinearSolveTerminationMode
 ```
-
-### Return Codes (Deprecated)
-
-These are deprecated and will be removed in a future release. Use the
-`use_deprecated_retcodes = Val(false)` option to `SciMLBase.init` to use the new return
-`ReturnCode` versions.
-
-```@docs
-DiffEqBase.NonlinearSafeTerminationReturnCode
-DiffEqBase.NonlinearSafeTerminationReturnCode.Success
-DiffEqBase.NonlinearSafeTerminationReturnCode.Default
-DiffEqBase.NonlinearSafeTerminationReturnCode.Failure
-DiffEqBase.NonlinearSafeTerminationReturnCode.PatienceTermination
-DiffEqBase.NonlinearSafeTerminationReturnCode.ProtectiveTermination
-```
diff --git a/test/core/rootfind_tests.jl b/test/core/rootfind_tests.jl
@@ -1,7 +1,8 @@
 @testsetup module CoreRootfindTesting
 using Reexport
 @reexport using BenchmarkTools, LinearSolve, NonlinearSolve, StaticArrays, Random,
-                LinearAlgebra, ForwardDiff, Zygote, Enzyme, DiffEqBase
+                LinearAlgebra, ForwardDiff, Zygote, Enzyme, DiffEqBase,
+                SparseConnectivityTracer
 using LineSearches: LineSearches
 
 _nameof(x) = applicable(nameof, x) ? nameof(x) : _nameof(typeof(x))
@@ -116,12 +117,12 @@ end
     @test nlprob_iterator_interface(quadratic_f, p, Val(false), NewtonRaphson()) ≈ sqrt.(p)
     @test nlprob_iterator_interface(quadratic_f!, p, Val(true), NewtonRaphson()) ≈ sqrt.(p)
 
-    @testset "ADType: $(autodiff) u0: $(_nameof(u0))" for autodiff in (
-            AutoSparse(AutoForwardDiff()), AutoSparse(AutoFiniteDiff()),
-            AutoZygote(), AutoSparse(AutoZygote()), AutoSparse(AutoEnzyme())),
+    @testset "Sparsity ADType: $(autodiff) u0: $(_nameof(u0))" for autodiff in (
+            AutoForwardDiff(), AutoFiniteDiff(), AutoZygote(), AutoEnzyme()),
         u0 in (1.0, [1.0, 1.0])
 
-        probN = NonlinearProblem(quadratic_f, u0, 2.0)
+        probN = NonlinearProblem(
+            NonlinearFunction(quadratic_f; sparsity = TracerSparsityDetector()), u0, 2.0)
         @test all(solve(probN, NewtonRaphson(; autodiff)).u .≈ sqrt(2.0))
     end
 
@@ -180,12 +181,12 @@ end
     @test nlprob_iterator_interface(quadratic_f!, p, Val(true), TrustRegion()) ≈ sqrt.(p)
 
     @testset "$(_nameof(autodiff)) u0: $(_nameof(u0)) $(radius_update_scheme)" for autodiff in (
-            AutoSparse(AutoForwardDiff()), AutoSparse(AutoFiniteDiff()),
-            AutoZygote(), AutoSparse(AutoZygote()), AutoSparse(AutoEnzyme())),
+            AutoForwardDiff(), AutoFiniteDiff(), AutoZygote(), AutoEnzyme()),
         u0 in (1.0, [1.0, 1.0]),
         radius_update_scheme in radius_update_schemes
 
-        probN = NonlinearProblem(quadratic_f, u0, 2.0)
+        probN = NonlinearProblem(
+            NonlinearFunction(quadratic_f; sparsity = TracerSparsityDetector()), u0, 2.0)
         @test all(solve(probN, TrustRegion(; autodiff, radius_update_scheme)).u .≈
                   sqrt(2.0))
     end
@@ -276,11 +277,11 @@ end
     end
 
     @testset "ADType: $(autodiff) u0: $(_nameof(u0))" for autodiff in (
-            AutoSparse(AutoForwardDiff()), AutoSparse(AutoFiniteDiff()),
-            AutoZygote(), AutoSparse(AutoZygote()), AutoSparse(AutoEnzyme())),
+            AutoForwardDiff(), AutoFiniteDiff(), AutoZygote(), AutoEnzyme()),
         u0 in (1.0, [1.0, 1.0])
 
-        probN = NonlinearProblem(quadratic_f, u0, 2.0)
+        probN = NonlinearProblem(
+            NonlinearFunction(quadratic_f; sparsity = TracerSparsityDetector()), u0, 2.0)
         @test all(solve(
             probN, LevenbergMarquardt(; autodiff); abstol = 1e-9, reltol = 1e-9).u .≈
                   sqrt(2.0))
@@ -458,11 +459,11 @@ end
         quadratic_f!, p, Val(true), PseudoTransient(; alpha_initial = 10.0)) ≈ sqrt.(p)
 
     @testset "ADType: $(autodiff) u0: $(_nameof(u0))" for autodiff in (
-            AutoSparse(AutoForwardDiff()), AutoSparse(AutoFiniteDiff()),
-            AutoZygote(), AutoSparse(AutoZygote()), AutoSparse(AutoEnzyme())),
+            AutoForwardDiff(), AutoFiniteDiff(), AutoZygote(), AutoEnzyme()),
         u0 in (1.0, [1.0, 1.0])
 
-        probN = NonlinearProblem(quadratic_f, u0, 2.0)
+        probN = NonlinearProblem(
+            NonlinearFunction(quadratic_f; sparsity = TracerSparsityDetector()), u0, 2.0)
         @test all(solve(probN, PseudoTransient(; alpha_initial = 10.0, autodiff)).u .≈
                   sqrt(2.0))
     end