Merge branch 'master' into compathelper/new_version/2023-03-11-00-25-…

…12-644-00695807254

.buildkite/run_benchmark.yml

@@ -15,7 +15,7 @@ steps:
  - BUILDKITE_S3_SECRET_ACCESS_KEY="U2FsdGVkX19MkMLkCxkclrpxYMfzHvYlUJssaSbX/wkdNiL+H5/aHwiYiTsBXyXh2m/1pcIUMHCR0nerHevB8g=="
  - BUILDKITE_S3_DEFAULT_REGION="U2FsdGVkX18ccoE9FmtkwsCm1x0MLMBlN/FLcAyKkY4="
  - JuliaCI/julia#v1:
- version: 1.8
+ version: 1.9
  - staticfloat/sandbox:
  rootfs_url: "https://github.com/ven-k/Placeholder/releases/download/v0.23.0/aws_uploader.x86_64.tar.gz"
  rootfs_treehash: "d46b35aa927024de8729d63fde18442a0a590e62"

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+ - package-ecosystem: "github-actions"
+ directory: "/" # Location of package manifests
+ schedule:
+ interval: "weekly"

.github/workflows/CompatHelper.yml

@@ -10,7 +10,7 @@ jobs:
  build:
  runs-on: ubuntu-latest
  steps:
- - uses: actions/checkout@v2
+ - uses: actions/checkout@v3
  - name: Pkg.add("CompatHelper")
  run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
  - name: CompatHelper.main()

.github/workflows/update.yml

@@ -10,7 +10,7 @@ jobs:
  runs-on: ubuntu-latest
  steps:
  - name: checkout
- uses: actions/checkout@v2
+ uses: actions/checkout@v3
  - name: update step
  uses: julia-actions/setup-julia@v1
  with:

Project.toml

@@ -1,7 +1,7 @@
 name = "SciMLBenchmarks"
 uuid = "31c91b34-3c75-11e9-0341-95557aab0344"
 authors = ["Chris Rackauckas, Yingbo Ma, Vaibhav Dixit"]
-version = "0.1.1"
+version = "0.1.3"
 
 [deps]
 Git = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"

benchmarks/Bio/BCR.jmd

@@ -311,9 +311,10 @@ wp = WorkPrecisionSet([oprob,oprob_sparse,sparsejacprob],abstols,reltols,setups;
 
 names = ["CVODE_BDF (GMRES, iLU)" "QNDF (GMRES, iLU)" "FBDF (GMRES, iLU)" "QNDF (KLU, sparse jac)" "FBDF (KLU, sparse jac)" "KenCarp4 (KLU, sparse jac)"]
 colors = [:green :deepskyblue1 :dodgerblue2 :royalblue2 :slateblue3 :lightskyblue]
-markershapes = [:octagon, :hexagon, :rtriangle, :pentagon, :ltriangle, :star5]
+markershapes = [:octagon :hexagon :rtriangle :pentagon :ltriangle :star5]
 xlimit,ylimit = plot_settings(wp)
-plot(wp;label=names,xlimit=xlimit,ylimit=ylimit,xticks=[1e-10,1e-9,1e-8,1e-7,1e-6,1e-5,1e-4,1e-3],yticks=[],color=colors,markershape=markershapes,legendfontsize=15,tickfontsize=15,guidefontsize=15, legend=:topright, lw=20, la=0.8, markersize=20,markerstrokealpha=1.0, markerstrokewidth=1.5, gridalpha=0.3, gridlinewidth=7.5,size=(1100,1000))
+xlimit = xlimit .* [0.95,1/0.95]; ylimit = ylimit .* [0.95,1/0.95]; 
+plot(wp;label=names,left_margin=10Plots.mm,right_margin=10Plots.mm,xlimit=xlimit,ylimit=ylimit,xticks=[1e-3,1e-2,1e-1,1e0,1e1,1e2,1e3],yticks=[1e0,1e1,1e2,1e3],color=colors,markershape=markershapes,legendfontsize=15,tickfontsize=15,guidefontsize=15, legend=:topright, lw=20, la=0.8, markersize=20,markerstrokealpha=1.0, markerstrokewidth=1.5, gridalpha=0.3, gridlinewidth=7.5,size=(1100,1000))
 ```
 
 ```julia, echo = false