Merge pull request #28 from ScilifelabDataCentre/alter_publications_g…

…raph update publications graph
ScilifelabDataCentre · Jan 17, 2024 · 2cea706 · 2cea706
2 parents d631875 + e0c8697
commit 2cea706
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/runner_every10mins.sh b/runner_every10mins.sh
@@ -2,9 +2,9 @@ export CODE_PATH=/code
 
 # Covid quatification SLU
 PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_slu_regular.py > "$CODE_PATH"/output/wastewater_combined_slu_regular.json
-# Covid quatification KTH
-PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_stockholm_regular.py > "$CODE_PATH"/output/wastewater_combined_stockholm.json
-PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/quant_malmo_kthplot.py > "$CODE_PATH"/output/wastewater_kthmalmo.json
+# Covid quatification KTH (not currently updating)
+#PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_stockholm_regular.py > "$CODE_PATH"/output/wastewater_combined_stockholm.json
+#PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/quant_malmo_kthplot.py > "$CODE_PATH"/output/wastewater_kthmalmo.json
 # Covid quatification GU
 PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/gothenburg_covid.py > "$CODE_PATH"/output/wastewater_gothenburg.json
 # Enteric virus GU

diff --git a/runner_weekly.sh b/runner_weekly.sh
@@ -3,7 +3,8 @@ export CODE_PATH=/code
 PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/Wordcloud python "$CODE_PATH"/gen_clouds.py
 
 # Publication related updates
-python "$CODE_PATH"/gen_publication_count.py > "$CODE_PATH"/output/covid-portal-publication-counts.json
+PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/Count_publications python "$CODE_PATH"/covid-portal-visualisations/Count_publications/count_publications.py > "$CODE_PATH"/output/COVID_publication_count.json
+#python "$CODE_PATH"/gen_publication_count.py > "$CODE_PATH"/output/covid-portal-publication-counts.json
 python "$CODE_PATH"/gen_recent_pub.py > "$CODE_PATH"/output/covid-portal-recent10.json
 
 # Upload generated files