Fix permissions issue with GitHub workflow #5
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pkgdown.yaml | |
| permissions: read-all | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| id-token: write | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| # As cmdstanr is not yet on CRAN, configure the action to only install the | |
| # 'Depends' packages by default and then manually specify the 'Suggests' | |
| # packages that are needed | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: NA | |
| extra-packages: | | |
| ape | |
| stan-dev/cmdstanr | |
| coevolve | |
| colorspace | |
| dplyr | |
| ggdist | |
| ggplot2 | |
| knitr | |
| methods | |
| phangorn | |
| phaseR | |
| pkgdown | |
| posterior | |
| purrr | |
| rcmdcheck | |
| readr | |
| rlang | |
| rmarkdown | |
| stringr | |
| testthat | |
| tidyr | |
| withr | |
| - name: Build Cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = parallel::detectCores()) | |
| shell: Rscript {0} | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/github-pages-deploy-action@v4.5.0 | |
| with: | |
| clean: false | |
| branch: main | |
| folder: docs |