Fully automated analysis pipeline for electrophysiology data.
Requirements
- MATLAB 2020a+
- Clarinet installed on matlab
- Windows, Linux, or iOS
Description This pipeline is designed for electrophysiology data acquired using Symphony Data Acquisition software . It is used to analyze raw timeseries (as they come off of an amplifier) to extract meaningful neurophysiological signatures. Compatible data types include voltage clamp, current clamp, and cell-attached/extracellular data. To use, download the repository onto your local device, and follow the instructions in the appInfo/instructions.html file. For questions, contact scott.harris@ucsf.edu, or the Dunn Lab at UCSF.
Use
To use, download this repository onto your computer and place it on your matlab path. Make sure Clarinet is installed as well. Enter physiologyPipeline into the MATLAB command window. A small GUI should open. You can find complete usage instructions by selecting Info-->Instructions from the menubar. You can also find instructions in the repository by opening /appInfo/instructions.html.