Natural Language Processing for Systematic Reviews

This is a Jupyter R notebook set of scripts to extract meaningful information when performing a Systematic Literature Review.

Pull requests are welcome!

To run in your computer

jupyter notebook

To install jupyter in ubuntu, follow these steps in this specific order:

• Configure a virtualenv (preferred version is pip3)

   virtualenv --python=/usr/bin/python3 rkernels
   source rkernels/bin/activate
  

• Install jupyter using pip

   pip install --upgrade pip
   pip install jupyter
  

• Initialize R in terminal

   install.packages("devtools") 
   install.packages("pbdZMQ")
   install.packages("epr")
   devtools::install_github('IRkernel/IRkernel')
   IRkernel::installspec()
  

Additional Packages

• R
  • install.packages(c("readxl","rvest", "reticulate", "tidyverse", "ggplot2", "officer"))
• Python
  • pip install spacy

References

• Officer
• Spacy
• https://marcocarnini.github.io/software/2016/08/01/installing-r-kernel-for-jupyter.html
• https://jupyter.readthedocs.io/en/latest/install.html
• https://medium.com/@kyleake/how-to-install-r-in-jupyter-with-irkernel-in-3-steps-917519326e41

Credits

• SensorNet-UFAL