JubRi is a R package that performs literature-based keyword ontology. JubRi utilizes a curated keyword database of roughly 18,000 genes queried using the PubMedScrapeR R package.
Use devtools to install JubRi directly from GitHub. Some user may experience an installation error related to the patchwork R package dependency. Please ensure that this dependency is successfully installed prior to JubRi installation.
# if(!require(devtools)) {install.packages(devtools)}
# devtools::install_github("thomasp85/patchwork") # dependency, not avail on CRAN
devtools::install_github("ShanSabri/JubRi")
See example/example.R on how to generate a metaplot of term enrichments given a query set, shown below:
Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.
Please make sure to update tests as appropriate.