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R: update 4.4.2 #8677

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R: update 4.4.2 #8677

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afhpayne
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@afhpayne afhpayne commented Nov 8, 2024

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github-actions bot commented Nov 8, 2024

reverse dependencies - academic/R

  • academic/SeqMonk
  • academic/cistrome-conductGO
  • academic/cistrome-mdseqpos
  • academic/rpy2
  • development/rstudio-desktop
  • development/rstudio-desktop-legacy

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github-actions bot commented Nov 8, 2024

✅ sbolint - academic/R ✅

sbolint: R checks out OK

@willysr
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willysr commented Nov 8, 2024

@sbo-bot: build academic/R

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sbo-bot bot commented Nov 8, 2024

buildpkg i586 academic/R

Creating hintfile directory: /etc/repo/SBo/hintfiles
Checking whether git is clean ... yes.
Indexing SlackBuilds ... done.
git repo: /var/lib/repo/SBo/slackbuilds
branch:   HEAD
date:     Fri Nov  8 21:27:12 GMT 2024
revision: 2ebcabb30b15b1b918f2f3e63a9435a71ade5847
title:    Merge b2965a4de446b3700863c9ab31ce3c42b938a993 into 3e6f0582a860188912565acd98f8fc6cbd979b23

================================================================================
academic/R                                                              23:50:15
================================================================================

Calculating dependencies ... none.

Building academic/R (update for version 4.4.2) ------------------------ 23:50:15
Testing SlackBuild files ... done.
Downloading source files ...
Verifying source files ... done.
Running R.SlackBuild ...                                            ETA 23:56:??
env MAKEFLAGS='-j24 -l13' nice -n 5 bash ./R.SlackBuild
Build time 346 sec, peak load 7.84, peak memory 525M, peak tmp 340M
Built ok:  R-4.4.2-i586-1_SBo.txz                                       23:56:01
WARNING: academic/R: Files/directories were modified in the chroot
/root/.texlive2023
Testing package R-4.4.2-i586-1_SBo.txz ... done.
Test installing R-4.4.2-i586-1_SBo.txz ...
R-4.4.2-i586-1_SBo: language and environment for statistical computing . [  85M]
Unmounting chroot ... done.
Backed up: R-4.4.1-i586-2_SBo.txz
✅ academic/R Updated for version 4.4.2 ✅

================================================================================
SUMMARY                                                                 23:56:14
================================================================================

Logfile:     /var/log/repo/SBo/repo_2024-11-08_23:50:14.log
Runtime:     0h 6m 0s
Updated:     1
  academic/R/R-4.4.2-i586-1_SBo.txz
Warnings:    1
  academic/R: Files/directories were modified in the chroot

Snipped Build Log

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Slackware package /tmp/SBo/repo.oFxg7z/output_R/R-4.4.2-i586-1_SBo.txz created.

Build time 346 sec, peak load 7.84, peak memory 525M, peak tmp 340M
Built ok:  R-4.4.2-i586-1_SBo.txz                                       23:56:01
WARNING: academic/R: Files/directories were modified in the chroot
/root/.texlive2023
Testing package R-4.4.2-i586-1_SBo.txz ... 
Test installing R-4.4.2-i586-1_SBo.txz ...
R-4.4.2-i586-1_SBo: language and environment for statistical computing . [  85M]
Unmounting chroot ... 
Backed up: R-4.4.1-i586-2_SBo.txz
:-) academic/R Updated for version 4.4.2 (-:

@sbo-bot sbo-bot
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sbo-bot bot commented Nov 8, 2024

sbopkglint i586 academic/R

Using tests from /usr/share/sbo-maintainer-tools/sbopkglint.d
Exploding /var/lib/repo/SBo/packages/15.0/i586/academic/R/R-4.4.2-i586-1_SBo.txz to /tmp/SBo/sbopkglint.IwlMoF ...OK
Running pre-doinst test...OK
Installing /var/lib/repo/SBo/packages/15.0/i586/academic/R/R-4.4.2-i586-1_SBo.txz to /tmp/SBo/sbopkglint.IwlMoF ...OK
Running test: 05-basic-sanity...
___ note: package contains empty dirs, are these necessary?
drwxr-xr-x 2 root root 6 Nov  8 23:55 ./usr/lib/R/tests/Packages
OK
Running test: 10-docs...
___ note: install instructions found, is this relevant for binary package users?: usr/doc/R-4.4.2/INSTALL
OK
Running test: 15-noarch...OK
Running test: 20-arch...OK
Running test: 25-lafiles...OK
Running test: 30-manpages...OK
Running test: 35-desktop...OK
Running test: 40-newconfig...OK
Running test: 45-doinst...OK
Running test: 50-icons...OK
Running test: 60-usr_info...OK
Running test: 65-python...OK
Running test: 70-tmp_path...OK
Running test: 75-static_libs...OK
Running test: 85-perl...OK
Running test: 90-terminfo...OK
✅ === R-4.4.2-i586-1_SBo.txz: All tests passed ✅

@willysr
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willysr commented Nov 8, 2024

merged

@willysr willysr closed this Nov 8, 2024
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sbo-bot bot commented Nov 9, 2024

buildpkg x86_64 academic/R

Creating hintfile directory: /etc/repo/SBo/hintfiles
Checking whether git is clean ... yes.
Indexing SlackBuilds ... done.
git repo: /var/lib/repo/SBo/slackbuilds
branch:   HEAD
date:     Fri Nov  8 21:27:12 GMT 2024
revision: 2ebcabb30b15b1b918f2f3e63a9435a71ade5847
title:    Merge b2965a4de446b3700863c9ab31ce3c42b938a993 into 3e6f0582a860188912565acd98f8fc6cbd979b23

================================================================================
academic/R                                                              23:57:26
================================================================================

Calculating dependencies ... none.

Building academic/R (update for version 4.4.2) ------------------------ 23:57:26
Testing SlackBuild files ... done.
Downloading source files ...
Verifying source files ... done.
Running R.SlackBuild ...                                            ETA 00:03:??
env MAKEFLAGS='-j24 -l13' nice -n 5 bash ./R.SlackBuild
Build time 301 sec, peak load 6.17, peak memory 693M, peak tmp 363M
Built ok:  R-4.4.2-x86_64-1_SBo.txz                                     00:02:27
WARNING: academic/R: Files/directories were modified in the chroot
/root/.texlive2023
Testing package R-4.4.2-x86_64-1_SBo.txz ... done.
Test installing R-4.4.2-x86_64-1_SBo.txz ...
R-4.4.2-x86_64-1_SBo: language and environment for statistical computing [  85M]
Unmounting chroot ... done.
Backed up: R-4.4.1-x86_64-2_SBo.txz
✅ academic/R Updated for version 4.4.2 ✅

================================================================================
SUMMARY                                                                 00:02:39
================================================================================

Logfile:     /var/log/repo/SBo/repo_2024-11-08_23:57:25.log
Runtime:     0h 5m 14s
Updated:     1
  academic/R/R-4.4.2-x86_64-1_SBo.txz
Warnings:    1
  academic/R: Files/directories were modified in the chroot

Snipped Build Log

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Slackware package /tmp/SBo/repo.TiQCJQ/output_R/R-4.4.2-x86_64-1_SBo.txz created.

Build time 301 sec, peak load 6.17, peak memory 693M, peak tmp 363M
Built ok:  R-4.4.2-x86_64-1_SBo.txz                                     00:02:27
WARNING: academic/R: Files/directories were modified in the chroot
/root/.texlive2023
Testing package R-4.4.2-x86_64-1_SBo.txz ... 
Test installing R-4.4.2-x86_64-1_SBo.txz ...
R-4.4.2-x86_64-1_SBo: language and environment for statistical computing [  85M]
Unmounting chroot ... 
Backed up: R-4.4.1-x86_64-2_SBo.txz
:-) academic/R Updated for version 4.4.2 (-:

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sbo-bot bot commented Nov 9, 2024

sbopkglint x86_64 academic/R

Using tests from /usr/share/sbo-maintainer-tools/sbopkglint.d
Exploding /var/lib/repo/SBo/packages/15.0/x86_64/academic/R/R-4.4.2-x86_64-1_SBo.txz to /tmp/SBo/sbopkglint.8kxgJ7 ...OK
Running pre-doinst test...OK
Installing /var/lib/repo/SBo/packages/15.0/x86_64/academic/R/R-4.4.2-x86_64-1_SBo.txz to /tmp/SBo/sbopkglint.8kxgJ7 ...OK
Running test: 05-basic-sanity...
___ note: package contains empty dirs, are these necessary?
drwxr-xr-x 2 root root 6 Nov  9 00:01 ./usr/lib64/R/tests/Packages
OK
Running test: 10-docs...
___ note: install instructions found, is this relevant for binary package users?: usr/doc/R-4.4.2/INSTALL
OK
Running test: 15-noarch...OK
Running test: 20-arch...OK
Running test: 25-lafiles...OK
Running test: 30-manpages...OK
Running test: 35-desktop...OK
Running test: 40-newconfig...OK
Running test: 45-doinst...OK
Running test: 50-icons...OK
Running test: 60-usr_info...OK
Running test: 65-python...OK
Running test: 70-tmp_path...OK
Running test: 75-static_libs...OK
Running test: 85-perl...OK
Running test: 90-terminfo...OK
✅ === R-4.4.2-x86_64-1_SBo.txz: All tests passed ✅

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@afhpayne @willysr