Updating Freyja #208
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| ##### ------------------------------------------------------------------------------------------------ ##### | |
| ##### This caller workflow tests, builds, and pushes the image to Docker Hub and Quay using the most ##### | |
| ##### recent version of Freyja and downloading the most recent variant information. ##### | |
| ##### It takes no manual input. ##### | |
| ##### ------------------------------------------------------------------------------------------------ ##### | |
| name: Update Freyja | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '30 7 * * 1' | |
| run-name: Updating Freyja | |
| jobs: | |
| update: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: pull repo | |
| uses: actions/checkout@v4 | |
| - name: set freyja version | |
| id: latest_version | |
| run: | | |
| version=1.5.2 | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| file=freyja/$version/Dockerfile | |
| ls $file | |
| echo "file=$file" >> $GITHUB_OUTPUT | |
| - name: set up docker buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: build to test | |
| id: docker_build_to_test | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: ${{ steps.latest_version.outputs.file }} | |
| target: test | |
| load: true | |
| push: false | |
| tags: freyja:update | |
| - name: get freyja database version | |
| id: db_version | |
| run: | | |
| docker run freyja:update freyja demix --version | |
| version=$(docker run freyja:update freyja demix --version | grep . | grep -v Barcode | head -n 1) | |
| echo "the latest version is $version" | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| - name: Get current date | |
| id: date | |
| run: | | |
| date=$(date '+%Y-%m-%d') | |
| echo "the date is $date" | |
| echo "date=$date" >> $GITHUB_OUTPUT | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Login to Quay | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: quay.io | |
| username: ${{ secrets.QUAY_USERNAME }} | |
| password: ${{ secrets.QUAY_ROBOT_TOKEN }} | |
| - name: Build and push Dockerfile | |
| id: docker_build_and_push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| file: ${{ steps.latest_version.outputs.file }} | |
| target: app | |
| push: true | |
| tags: | | |
| staphb/freyja:${{ steps.latest_version.outputs.version }}-${{ steps.db_version.outputs.version }}-${{ steps.date.outputs.date }} | |
| staphb/freyja:latest | |
| quay.io/staphb/freyja:${{ steps.latest_version.outputs.version }}-${{ steps.db_version.outputs.version }}-${{ steps.date.outputs.date }} | |
| quay.io/staphb/freyja:latest | |
| - name: Image digest | |
| run: echo ${{ steps.docker_build_user_defined_tag.outputs.digest }} |