Skip to content

Updating Freyja

Updating Freyja #192

Workflow file for this run

##### ------------------------------------------------------------------------------------------------ #####
##### This caller workflow tests, builds, and pushes the image to Docker Hub and Quay using the most #####
##### recent version of Freyja and downloading the most recent variant information. #####
##### It takes no manual input. #####
##### ------------------------------------------------------------------------------------------------ #####
name: Update Freyja
on:
workflow_dispatch:
schedule:
- cron: '30 7 * * *'
run-name: Updating Freyja
jobs:
update:
runs-on: ubuntu-latest
steps:
- name: pull repo
uses: actions/checkout@v4
- name: set freyja version
id: latest_version
run: |
version=1.5.1
echo "version=$version" >> $GITHUB_OUTPUT
file=freyja/$version/Dockerfile
ls $file
echo "file=$file" >> $GITHUB_OUTPUT
- name: set up docker buildx
id: buildx
uses: docker/setup-buildx-action@v3
- name: build to test
id: docker_build_to_test
uses: docker/build-push-action@v5
with:
file: ${{ steps.latest_version.outputs.file }}
target: test
load: true
push: false
tags: freyja:update
- name: get freyja database version
id: db_version
run: |
docker run freyja:update freyja demix --version
version=$(docker run freyja:update freyja demix --version | grep . | grep -v Barcode | head -n 1)
echo "the latest version is $version"
echo "version=$version" >> $GITHUB_OUTPUT
- name: Get current date
id: date
run: |
date=$(date '+%Y-%m-%d')
echo "the date is $date"
echo "date=$date" >> $GITHUB_OUTPUT
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKER_HUB_USERNAME }}
password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
- name: Login to Quay
uses: docker/login-action@v3
with:
registry: quay.io
username: ${{ secrets.QUAY_USERNAME }}
password: ${{ secrets.QUAY_ROBOT_TOKEN }}
- name: Build and push Dockerfile
id: docker_build_and_push
uses: docker/build-push-action@v5
with:
file: ${{ steps.latest_version.outputs.file }}
target: app
push: true
tags: |
staphb/freyja:${{ steps.latest_version.outputs.version }}-${{ steps.db_version.outputs.version }}-${{ steps.date.outputs.date }}
staphb/freyja:latest
quay.io/staphb/freyja:${{ steps.latest_version.outputs.version }}-${{ steps.db_version.outputs.version }}-${{ steps.date.outputs.date }}
quay.io/staphb/freyja:latest
- name: Image digest
run: echo ${{ steps.docker_build_user_defined_tag.outputs.digest }}