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# Unicycler container | ||
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Main tools: | ||
- [Unicycler](https://github.com/rrwick/Unicycler) | ||
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Other tools: | ||
- [spades](https://github.com/ablab/spades) | ||
- [racon](https://github.com/isovic/racon) | ||
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Unicycler is a hybrid assembler that takes reads assembled with spades and ties them together with long reads. | ||
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# Example Usage | ||
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``` | ||
unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -l long_reads.fastq.gz -o output_dir | ||
``` | ||
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Better documentation can be found at [https://github.com/rrwick/Unicycler](https://github.com/rrwick/Unicycler) |