added skani

[Kincekara]

Closes #747

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • [] If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[erinyoung]

Looks good.

Test works great

#13 [test 2/2] RUN skani dist e.coli-EC590.fasta e.coli-K12.fasta
#13 0.095 [00:00:00.000] (7fd3f5ef3800) INFO   skani dist e.coli-EC590.fasta e.coli-K12.fasta
#13 0.158 [00:00:00.063] (7fd3f5ef3800) INFO   Learned ANI mode detected. ANI may be adjusted according to a regression model trained on MAGs.
#13 0.158 [00:00:00.063] (7fd3f5ef3800) INFO   Generating sketch time: 0.063406564
#13 0.175 [00:00:00.080Ref_file	Query_file	ANI	Align_fraction_ref	Align_fraction_query	Ref_name	Query_name
#13 0.175 e.coli-K12.fasta	e.coli-EC590.fasta	99.39	91.89	92.46	NC_007779.1 Escherichia coli str. K-12 substr. W3110, complete sequence	NZ_CP016182.2 Escherichia coli strain EC590 chromosome, complete genome
#13 0.175 ] (7fd3f5ef3800) INFO   ANI calculation time: 0.01666564
#13 DONE 0.2s

[erinyoung]

I added a hyperlink to the readme.md, which is going to re-trigger the github actions (GA).

Once that finishes, I'll

• merge this PR
• deploy to dockerhub and quay using skani
• use the tags '0.2.0' as well as 'latest'

[erinyoung]

You can check the status of the deploy here : https://github.com/StaPH-B/docker-builds/actions/runs/6315037174

[Kincekara]

Thanks!